Multiplex Image Analysis Workshop : Preliminary Program
12 Oct - 13 Oct
| Thursday, October 12, 2023 | Start | End | Location |
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Introduction to multiplexing technologies and multiplex image analysis Session Chair: Sripad Ram |
09:00 | 09:20 | Seminar room |
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Multiplex image analysis workflow Session Chair: Sripad Ram |
09:20 | 10:30 | Seminar room |
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QuPath for multiplex image analysis # 76 Peter Bankhead University of Edinburgh, Edinburgh, United Kingdom, |
09:20 | 09:55 | |
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Proteomap – A low-cost cyclic immunofluorescence microscopy workflow suitable for fast-paced discovery research # 70 Shoh Asano , Thomas Fabre , Alexander Barron , Alexis White , Kathryn Bound , Shoh Asano Pfizer Inc., Cambridge, MA, United States, |
09:55 | 10:30 | |
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Morning break |
10:30 | 11:15 | Reception area |
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Multiplexing techniques - validation & clinical applications Session Chair: Sara A. McArdle |
11:15 | 12:30 | Seminar room |
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Evaluation of Ultivue InSituPlex technology using human and mouse tumor specimens # 42 Sripad Ram Pfizer Inc, San Diego, United States, |
11:20 | 11:50 | |
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An integrated toolkit for analyzing high-dimensional imaging data # 75 Noah F. Greenwald Stanford, Palo Alto, United States, |
11:50 | 12:20 | |
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Evaluating the PhenoCycler Fusion (CODEX) System and a Robust Analysis Pipeline # 82 Abhishek Aggarwal Gilead Sciences Inc., Foster City, United States, |
12:20 | 12:50 | |
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Lunch + networking |
12:45 | 14:15 | Reception area |
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Cell/tissue segmentation and phenotyping Session Chair: Zbigniew Mikulski |
14:15 | 15:15 | Seminar room |
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From oncology to cardiology: Spatial omics technologies for topographic biomarker discovery # 78 Denis Schapiro Heidelberg University Hospital, Heidelberg, Germany, |
14:15 | 14:45 | |
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Tissue segmentation approaches to reveal spatial characteristics of the tumor microenvironment # 65 Colt Egelston , Oscar Colunga Flores , Weihua Guo , Jian Ye Beckman Research Institute, City of Hope, Duarte, United States, |
14:45 | 15:00 | |
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Tools to Predict Biological Aggressiveness from Tissue Sections # 81 Calum MacAulay , Fumiya Inaba , Kouther Noureddine , Shunsuke Ishige , Martial Guillaud BC Cancer, Vancouver, Canada, |
15:00 | 15:15 | |
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Round table discussion - Application of multiplexing panels in clinical studies Panelists: Carmen Ballesteros-Merino, Bristol Myers Squibb Abhishek Aggarwal, Gilead Sciences Session Chair: Sripad Ram |
15:15 | 16:00 | Seminar room |
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Afternoon break |
16:00 | 16:45 | Reception area |
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Spatial analysis of multiplex imaging data Session Chair: Sara A. McArdle |
16:45 | 18:00 | Seminar room |
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Quantifying the Spatial Distribution of Immune Cells in Tumors # 57 Clare C. Yu , Juliana C. Wortman , Ting-Fang He , Shawn Solomon , Robert Z. Zhang , Anthony Rosario , Roger Wang , Travis Y. Tu , Daniel Schmolze , Yuan Yuan , Susan E. Yost , Xuefei Li , Herbert Levine , Gurinder Atwal , Peter P. Lee University of California, Irvine, Irvine, United States, |
16:45 | 17:15 | |
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Learning spatial relationships between cell types in tissue images using multirange, multitype point process models # 51 Haoran Chen , Robert F. Murphy Carnegie Mellon University, Pittsburgh, United States, |
17:15 | 17:30 | |
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Discovering Microdomains from Multiplexed Datasets to Reveal the Hidden Circuits of Tumor Microenvironment # 64 Filippo Pullara , Chakra Srinivas Chennubhotla PredxBio, Inc, Pittsburgh, United States, |
17:30 | 18:00 | |
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Evening networking session with light refreshments |
18:00 | 18:30 | Reception area |
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Dinner |
18:30 | 20:00 | Reception area |
| Friday, October 13, 2023 | Start | End | Location |
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Combined spatial-omics and multiplex data analysis Session Chair: Sara A. McArdle |
09:00 | 10:30 | Seminar room |
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Spatial-omics Approaches To Interrogate Host-Disease Interactions # 77 Sizun Jiang Harvard Medical School, Boston, United States, |
09:00 | 09:30 | |
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Machine learning methods for decoding subcellular RNA organization from spatial transcriptomics data # 67 Clarence Mah , Noorsher Ahmed , Dylan Lam , Alexander Monell , Colin Kern , Yuanyuan Han , Gino Prasad , Anthony Cesnik , Emma Lundberg , Quan Zhu , Hannah Carter , Gene Yeo University of California, San Diego, San Diego, United States, |
09:30 | 09:45 | |
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Cross Platforms Proteomics and Genomics Data Integration for Full Spectrum of Cancer Profiling # 72 Jun Jiang , Raymond M. Moore , Ruifeng Guo , Wendy K. Nevala , Chathu L. Atherton , Svetomir N. Markovic , Chen Wang Mayo Clinic, Rochester, United States, Mayo Clinic, Rochester, United States, |
09:45 | 10:15 | |
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InstanSeg: fast, accurate cell segmentation for histology images # 49 Thibaut Goldsborough , Andrew Filby , Hakan Bilen , Peter Bankhead University of Edinburgh, Edinburgh, United Kingdom, |
10:15 | 10:30 | |
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Morning break |
10:30 | 11:15 | Reception area |
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Sponsored presentation- Canopy Biosciences A vendor presentation regarding their products and offering for multiplex image generation and analysis. |
11:15 | 11:45 | Seminar room |
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Multi-plex phenotyping and spatial analysis using CellScape imaging technology # 68 Marco Antonio Navarro , Matthew Ingalls , John Spencer Schwarz , Brian Lane , Xenia Meshik , Adam Northcutt Canopy Biosciences, St Louis, United States, |
11:15 | 11:45 | |
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QuPath software demo for multiplex image analysis A hands-on session to illustrate the various steps involved in multiplex image analysis. Topics covered will include nuclear and segmentation, cell phenotyping and spatial analysis. Session Chair: Sara A. McArdle |
11:45 | 12:30 | Seminar room |
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Lunch + networking |
12:30 | 14:00 | Reception area |
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Software demo + round table discussion Speakers in this session will discuss specific technical issues in multiplex image analysis using an 18-plex tonsil dataset. Session Chair: Sripad Ram |
14:00 | 15:15 | Seminar room |
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ariadne.ai: A workflow for high-precision registration, cell segmentation and marker intensity mapping for multiplex image data # 73 Fabian Svara ariadne.ai ag, Buchrain, Switzerland, |
14:00 | 14:15 | |
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Analysis of Multiplex Fluorescent Images Using HALO Software: Addressing Key Analytical Challenges # 83 Levi David Maston , Donald Allen Indica Labs, Albuquerque, United States, Indica Labs, Albuquerque, United States, |
14:15 | 14:30 | |
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Afternoon break |
15:15 | 16:00 | Reception area |
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Novel approaches in multiplex image analysis Session Chair: Sripad Ram |
16:00 | 17:15 | Seminar room |
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Making Multiplex Tissue Imaging More Broadly Accessible # 71 YoungHwan Chang Oregon Health and Science University, Portland, United States, |
16:00 | 16:30 | |
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Data-driven optimization of biomarker panels in highly multiplexed imaging # 52 Huangqingbo Sun , Jiayi Li , Robert F. Murphy Carnegie Mellon University, Pittsburgh, United States, |
16:30 | 16:45 | |
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Integrating AI and Pathology: A Novel Approach to Multiplexed IHC Data Segmentation and Classification # 61 Mark Zaidi , Mariam P. Alexander , Nicholas B. Larson , Aidan F. Mullan , Kevin Pavelko , Mark Stegall , Andrew Bentall , Timucin Taner , Trevor D. McKee , Bradly G. Wouters University of Toronto, Toronto, Canada, |
16:45 | 17:15 | |
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Poster session + wine reception |
17:15 | 18:30 | Reception area |
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Conference dinner |
18:30 | 20:00 | Reception area |
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October 13 (Friday): Poster session + wine reception
17:10 - 18:10
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Machine Learning Models That Distinguish Human Tumor Nuclei in Mouse Brain # 48 MhdAmmar Hafez , Judy Drazba , John W. Peterson Cleveland Clinic, Cleveland, United States, |
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Revolutionizing Spatially Correlated Metabolic Reactions: Multimodal Microscopy for Studying Aging and Diseases # 50 Hongje Jang , Zhi Li , Yajuan Li , Pegah Bagheri , Ellen Ackerstaff , Jason A. Koutcher , Lingyan Shi UC San Diego, La Jolla, United States, |
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The Immune Cell Tumor Microenvironment in HIV+ and HIV- Prostate Cancer Patients # 59 Wei Zhang , Yoko Derose , Gita Suneja , Anna Coghill , Beatrice Knudsen Huntsman Cancer Institute, Salt lake city, United States, |
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LED and Hydrogen Peroxide Autofluorescence quenching # 63 Brett Laffey , Zbigniew Mikulski La Jolla Institute for Immunology, La Jolla, United States, |
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Quantitative analysis of colorectal adenocarcinoma images obtained by single-shot 17-plex staining followed by imaging with the Orion™ spatial biology platform # 69 Edward Lo , Tad George , Selena Larkin RareCyte, Inc, Seattle, United States, |
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High-throughput pooled phenotypic CRISPR screening by machine vision-based cytometry # 74 Asako Tsubouchi , Andy Wu ThinkCyte Inc., Redwood City, United States, |