Spatial Analysis for Biological Imaging Workshop : Preliminary Program
29 Mar - 30 Mar
| Wednesday, March 29, 2023 | Start | End | Location |
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Welcome Session Chair: Edward Cohen , Raimund Ober |
10:00 | 10:10 | Imperial |
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Opening Talk |
10:10 | 10:50 | Imperial |
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Watching Immune Cells Kill Dan Davis |
10:10 | 10:50 | |
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Coffee Break |
10:50 | 11:10 | Imperial |
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Spatial Statistics and Visualization I |
11:10 | 12:40 | Imperial |
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Spatial Point Patterns: 101 to Manifolds Ed Cohen |
11:10 | 11:45 | |
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Interrogating the organization of biological processes at different scales with spatial statistics # 37 Thibault Lagache Institut Pasteur, Paris, France, |
11:45 | 12:20 | |
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ShapoGraphy: a new approach for visualising bioimaging and spatial data # 12 Heba Sailem King's College London, London, United Kingdom, |
12:20 | 12:40 | |
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Lunch Break |
12:40 | 13:40 | Imperial |
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Spatial Statistics and Visualization II |
13:40 | 15:15 | Imperial |
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Visualization, Interaction, and Unsupervised Quantification – Key Components in Large-Scale Spatial Omics Carolina Wählby |
13:40 | 14:15 | |
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Extended Pair Correlation Functions for Multiplex Medical Imaging # 26 Joshua A. Bull , Helen M. Byrne University of Oxford, Oxford, United Kingdom, |
14:15 | 14:35 | |
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A Deep Learning Based Pipeline for the Automation of Spatial Analysis in Liver Microscopy # 5 Michiel VerCruysse Flemish Institute For Biotechnology, Ghent, Belgium, |
14:35 | 14:55 | |
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Segmenting cells without cytoplasm marker for spatial transcriptomics # 16 Thomas Defard , Florian Massip , Florian Muller , Thomas Walter Institut Curie, PSL University, Paris, France, |
14:55 | 15:15 | |
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Coffee Break |
15:15 | 15:40 | Imperial |
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Clustering |
15:40 | 17:00 | Imerial |
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Community-based, nanoscale mapping of biomolecules in cells # 36 Dylan M. Owen University of Birmingham, Birmingham, United Kingdom, |
15:40 | 16:15 | |
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Clustering and inter-cluster distributions of dSTORM localisations for medical diagnosis: renal filtration protein patterns in healthy and diseased tissue # 21 Alistair P. Curd , Scarlet F. Brockmoeller , Hayley L. Slaney , James H. Felce , Philip Quirke University of Leeds, Leeds, United Kingdom, |
16:15 | 16:35 | |
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Benchmarking clustering algorithms to understand bacterial organisation # 25 Jacob AR Wright , Oliver J. Pambos , Piers Turner , Hafez el Sayyed , Achillefs Kapanidis University of Oxford, Oxford, United Kingdom, |
16:35 | 17:00 | |
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Poster Session |
17:00 | 19:00 | Imperial |
| Thursday, March 30, 2023 | Start | End | Location |
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Opening Session |
09:30 | 10:45 | Imperial |
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Deconstructing Disease Mechanisms, Therapy Responses and Patient Outcomes by Highly Multiplexed Tissue Imaging Christian Schürch (remote) |
09:30 | 10:05 | |
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Spatial Heterogeneity of Immune Response in Colorectal Cancer # 7 Vlad Popovici , Fernando Santa , Eva Budinska Masarykova Univerzita, Brno, Czech Republic, |
10:05 | 10:25 | |
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Unsupervised Cell Tracking and Semi-Supervised Division Detection in Video Microscopy with Low Temporal Resolution # 15 Daniel Zyss , Fehri Amin , Thomas Walter Mines PSL, Paris, France, |
10:25 | 10:45 | |
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Coffee Break |
10:45 | 11:10 | Imperial |
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Topological Approaches to Image Analysis |
11:10 | 12:25 | Imperial |
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Topological Imaging Summary Statistics for GBM Anthea Monod |
11:10 | 11:45 | |
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Topological encoding of relations in data from multiplex immunohistochemistry images # 24 Bernadette J. Stolz , Jagdeep Dhesi , Joshua A. Bull , Heather A. Harrington , Helen M. Byrne , HeeRhang Yoon EPFL (Swiss Federal Institute of Technology), Lausanne, Switzerland, |
11:45 | 12:05 | |
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Signed distance persistent homology of tubular and membranous shapes # 13 Anna You-Lai Song , Antoniana Batsivari , Anthea Monod , Dominique Bonnet Imperial College London, London, United Kingdom, |
12:05 | 12:25 | |
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Lunch |
12:25 | 13:40 | Imperial |
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Methods in Single Molecule Microscopy |
13:40 | 15:10 | Imperial |
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From images to information: enhancing resolution and improving accuracy in SMLM # 35 Susan Cox King's College London, London, United Kingdom, |
13:40 | 14:15 | |
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Spatial-Temporal Modeling for Nanoscale Resolvement of Photo-Switching Fluorophores Lekha Patel |
14:15 | 14:50 | |
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Open |
14:50 | 15:10 | |
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Coffee Break |
15:10 | 15:35 | Imperial |
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Closing Session |
15:35 | 16:50 | Imperial |
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Characterization of growth pattern landscape in lung adenocarcinoma using artificial intelligence and spatial intermixing networks # 38 Anca Grapa Institute of Cancer Research, London, United Kingdom, |
15:35 | 16:10 | |
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From macro to micro: 3D spatiotemporal analysis of nanoparticles in tumour tissue using VIOLA technology # 32 Sripad Ram Pfizer Inc, San Diego, United States, |
16:10 | 16:50 | |
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Conference Dinner |
18:00 | 20:00 | Hex Brasserie, Gloucester Road |
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March 29 (Wednesday): Poster Session
17:03 - 19:03
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Spatial analysis for Symmetrically optical images of polarimetry # 29 Bei Zhang Beihang University, Beijing, China, |
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Subtle phenotype discovery in yeast cells using deep learning-based instance segmentation of cryo-SXT # 17 Jacob M. Egebjerg , Richard Röttger , Daniel Wüstner University of Southern Denmark, Odense M, Denmark, |
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Analysis of nucleosome clusters in Drosophila primary spermatocytes # 19 Leila Muresan University of Cambridge, Cambridge, United Kingdom, |
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A generative model to synthetize the spatio-temporal dynamics of bio-molecules in living cells. # 9 Lisa Balsollier , Frédéric Lavancier , Charles Kervrann , Jean Salamero Laboratoire de Mathématiques Jean Leray, UMR 6629 CNRS, Nantes Université, Nantes, France, |
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Sparse Sampling Algorithm for Fast Raman Micro-Spectroscopy # 11 Lito P. Chatzidavari , Christopher J. Rowlands Imperial College London, London, United Kingdom, |
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Online Classification and Photomanipulation of Sparse Marine Organisms # 18 Christopher R. Rhodes , Joanna Zukowska , Rainer Pepperkok European Molecular Biology Laboratory, Heidelberg, Germany, |
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Fractal Characterization of the Spatial Distribution of Retinal Ganglion Cells for the Early Diagnosis of Glaucoma # 20 Jonathan Henderson , Hannah Mitchell , Benjamin Davis Queen's University Belfast, Belfast, United Kingdom, |
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New metric of a degree of clustering in a point pattern to study tumor microenvironment # 23 Evgenia Martynova , Johannes Textor , Carla van-Herpen , Gerben Lassche Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands, |
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Too much or not enough? The development of robust MINFLUX acquisition stopping criteria # 30 Benjamin M. Davis , Esther Garcia-Gonzalez , Christopher Tynan , Daniel James Rolfe , Marisa Martin-Fernandez OCTOPUS Group, Oxford, United Kingdom, |