QBI 2020 Conference Sessions
6 Jan - 9 Jan
Registration Desk Opens |
08:00 | 14:00 | Registration Desk/Area |
Keynote Lecture: Wolfgang Baumeister Session Chair: Alessandra Cambi |
08:30 | 09:10 | Room 1 |
Structural biology in situ: The promise and challenges of cryo-electron tomography (# 617)
Wolfgang Baumeister
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08:30 | 09:10 | |
Tutorial: Quantitative Phase Imaging Session Chair: Jörg Enderlein |
09:10 | 09:40 | Room 1 |
Quantitative Phase Imaging (# 396)
Alexander Jesacher
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09:10 | 09:40 | |
Coffee Break |
09:40 | 10:10 | Foyer |
Minisymposium: Correlative Microscopy Session Chair: Diane Lidke |
10:10 | 11:10 | Room 1 |
Imaging the nanoscale structure of endocytosis with correlative super-resolution light and electron microscopy. (# 577)
Justin W Taraska,
Kem Sochacki
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10:10 | 10:30 | |
Towards quantitative correlative microscopy (# 528)
Lucy M Collinson
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10:30 | 10:50 | |
Live-cell correlative microscopy of single organelles (# 590)
Nalan Liv
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10:30 | 10:50 | |
Session: Correlative/multimodal microscopy Session Chair: Alessandra Cambi |
11:10 | 12:10 | Room 1 |
Multimodal and multicolour microscopy to identify biomolecules in large-scale EM (# 310)
Pascal de Boer,
Aditi Srinivasa Raja,
Jacob Hoogenboom,
Ben Giepmans
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11:10 | 11:25 | |
Quantitative 3D super-resolution imaging of chromatin ‘blobs’ (# 420)
Lothar Schermelleh
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11:25 | 11:40 | |
Cryo-CARE Facilitates Sub-Tomogram Averaging in Cryo Transmission Electron Microscopy (# 453)
Tim-Oliver Buchholz,
Mareike Jordan,
Gaia Pigino,
Florian Jug
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11:40 | 11:55 | |
Towards correlative multimodal nanospectroscopy (# 329)
Iztok Urbancic,
Falk Schneider,
Erdinc Sezgin,
Silvia Galiani,
Christian Eggeling
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11:55 | 12:10 | |
Session: Tracking Session Chair: Sean Andersson |
10:10 | 12:10 | Room 2 |
Novel particle tracking approach with CNN-based candidate selection and two-step linking by Bayesian network (# 503)
Mariia Dmitrieva,
Jens Rittscher
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10:10 | 10:25 | |
Precise mapping of intracellular diffusion and drift from SPT data analysis (# 409)
Antoine Salomon,
Charles Kervrann
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10:25 | 10:40 | |
Probabilistic overall reconstruction of membrane-associated molecular dynamics from partial observations in rod-shaped bacteria (# 390)
Yunjiao LU,
Charles Kervrann,
Alain Trubuil,
Pierre Hodara
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10:40 | 10:55 | |
A 2-step algorithm for the estimation of time-varying Single Particle Tracking models (# 381)
Boris I Godoy,
Ye Lin,
Sean Andersson
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10:55 | 11:10 | |
Single-Particle Diffusion Characterization by Deep Learning (# 359)
Yoav Shechtman,
Naor Granik,
Yael Roichman,
Lucien E Weiss,
Elias E Nehme,
Eran Perlson
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11:10 | 11:25 | |
Faster FLImP – Towards High throughput image acquisition and track selection (# 341)
Ben Davis,
Michail Vrettas,
Michael Hirsch,
Sarah Needham,
Marisa Martin-Fernandez,
Daniel James Rolfe
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11:25 | 11:40 | |
Quantitative Comparison of Single Particle Tracking Algorithms Across Different Signal and Noise Levels (# 275)
Ye Lin,
Sean B. Andersson
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11:40 | 11:55 | |
Effect of pixelation on the parameter estimation of single molecule trajectories (# 569)
Milad Rafiee Vahid,
Bernard Hanzon,
Raimund J. Ober
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11:55 | 12:10 | |
Lunch (provided) |
12:10 | 13:30 | Food Area |
Minisymposium: Tissue Multiplexing Techniques and Applications in Oncology I Session Chair: Jens Rittscher |
13:30 | 15:30 | Room 1 |
Introduction to the minisymposium on tissue multiplexing – is more the merrier or messier? (# 591)
Sripad Ram
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13:30 | 13:40 | |
Multiplex immunohistochemistry and transcriptomic data (# 593)
Robert West
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13:40 | 14:00 | |
Implementation of multiplexing and image analysis to support drug discovery and development (# 571)
Shanon Seger
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14:00 | 14:20 | |
Deep Learning approaches for reliable quantification of muti-omics cell imaging datasets to interrogate RNA and protein spatial and temporal subcellular interactions (# 291)
Emmanuel Bouilhol,
Macha Nikolski,
Benjamin Dartigues,
Hayssam Soueidan,
Robyn Brackin,
Anca savulescu,
Musa Mhlanga
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14:20 | 14:35 | |
Understanding and Modeling Inflammation Induced Immuno-Suppression in Tumors Using Multi-plex Immunofluorescence and Live Cell Microscopy (# 336)
Stephen Lockett,
Anne Gilmore,
William Heinz,
David Scheiblin,
Sarah Flaherty,
Noemi Kedei,
Veena Somasundaram,
Lisa Ridnour,
Adelaide Wink,
Caleb Kim,
Valentin Magidson,
Erina Kamiya,
Jinqiu Chen,
David Wink
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14:35 | 14:55 | |
Highly multiplexed imaging in health and disease by imaging mass cytometry (# 607)
Bernd Bodenmiller
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14:55 | 15:15 | |
Multimodal mass spectrometry imaging of tumours (# 550)
Josephine Bunch
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15:15 | 15:30 | |
Session: Methods for Single Molecule Analysis Session Chair: Keith A Lidke |
13:30 | 15:30 | Room 2 |
Single Molecule Localization Microscopy using time modulated illumination (# 481)
Pierre Jouchet,
Clement Cabriel,
Nicolas Bourg,
Marion Bardou,
Christian Poüs,
Emmanuel Fort,
Sandrine Leveque-Fort
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13:30 | 13:45 | |
Identifying analysis algorithm induced image artefacts in localisation microscopy (# 469)
Richard John Marsh,
Ishan Costello,
Susan Cox
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13:45 | 14:00 | |
SIMPLE: Structured illumination based point localization estimator with enhanced precision (# 386)
Loïc Reymond,
Stefan Wieser,
Verena Ruprecht
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14:15 | 14:30 | |
Spatiotemporal Resolution as an Information Theoretical Property of Stochastic Optical Localization Nanoscopy (# 369)
Yi Sun
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14:30 | 14:45 | |
Haste makes waste – Slow imaging increases resolution and labeling efficiencies in SMLM (# 322)
Robin Diekmann,
Maurice Kahnwald,
Jonas Ries
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14:45 | 15:00 | |
Towards Bayesian based smart microscopy (# 283)
Juliette Griffie,
Paul Rolland,
Daniel Sage,
Robin Lang,
Volkan Cevher,
Suliana Manley
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15:00 | 15:15 | |
Single molecule localisation lightfield microscopy (# 290)
Leila A Muresan
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15:15 | 15:30 | |
Coffee Break |
15:30 | 16:00 | Foyer |
Minisymposium: Tissue Multiplexing Techniques and Applications in Oncology II Session Chair: Sripad Ram |
16:00 | 16:55 | Room 1 |
Multiplex Immune Cell Profiling to Gain Insights into Progression in Early Cancer (# 484)
Jens Rittscher,
Natalia Garcia Martin
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16:00 | 16:15 | |
Towards computational multiplex fluorescence microscopy: Machine learning-based integrated prediction of morphological and molecular tumor profiles (# 627)
Frederick Klauschen
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16:15 | 16:35 | |
Multiplex imaging of lung tumours with CODEX technology (# 584)
Marta Trüb,
Petra Herzig,
Nicole Kirchhammer,
Franziska Werner,
Kirsten Mertz,
Viktor Kölzer,
Abhishek Kashyap,
Alfred Zippelius
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16:35 | 16:55 | |
Session: Probe Development Session Chair: Daniel Wuestner |
17:00 | 17:45 | Room 1 |
Mechanical investigations of mEos4b blinking: longer single particle tracking with less track interruptions. (# 311)
Siewert Hugelier,
Elke De Zitter,
Daniel Thédié,
Viola Monkemöller,
Joel Beaudouin,
Virgile Adam,
Martin Byrdin,
Luc Vanmeervelt,
Dominique Bourgeois,
Peter Dedecker
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17:00 | 17:15 | |
Separation of cell signalling responses based on a new model for photoswitching in FRET biosensors (# 380)
Thijs Roebroek
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17:15 | 17:30 | |
Innovative buffer for long-lived fluorescence imaging for 2D and 3D dSTORM (# 357)
Angelina Provost,
corentin Rousset,
Camille Fourneaux,
Philippe Bouvet,
Jean-Jacques Diaz,
Catherine Ladavière,
marie-therese charreyre,
Arnaud Favier,
Christophe Place,
Karine MONIER
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17:30 | 17:45 | |
Session: Point spread function analysis Session Chair: Yoav Shechtman |
16:00 | 17:15 | Room 2 |
PSF-broadening due to fluorescence emission: principle and implications on imaging (# 288)
Jan Becker,
Rainer Heintzmann
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16:00 | 16:15 | |
Simultaneous multicolor single-molecule imaging using discrete PSF engineering (# 379)
Wim Vandenberg,
Marcel Leutenegger,
Fabian Hertel,
Bartosz Krajnik,
Arno Bouwens,
Robin Van den Eynde,
Ezra Bruggeman,
Thomas Schlichthärle,
Alexander Auer,
Ralf Jungmann,
Peter Dedecker
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16:15 | 16:30 | |
Measurement of the depth-dependence of point spread functions near the glass-water interface in high-numerical aperture microscopy (# 373)
Petar N Petrov,
William E. Moerner
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16:30 | 16:45 | |
A General Framework for Fitting an Arbitrary Model to SMLM Data (# 312)
Yu-Le Wu,
Markus Mund,
Philipp Hoess,
Aline Tschanz,
Jonas Ries
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16:45 | 17:00 | |
ZOLA-3D: a software for optimal 3D SMLM with arbitrary PSF (# 524)
Benoit Lelandais,
MICKAEL LELEK,
Jonas Ries,
Christophe Zimmer
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17:00 | 17:15 | |
Session: Machine Learning Session Chair: Christopher P Calderon |
17:15 | 18:00 | Room 2 |
DeepFocus: a Near One-Shot Micro-Manager Auto-focus Plugin using Convolutional Neural Networks (# 388)
Adrian Shajkofci,
Michael Liebling
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17:15 | 17:30 | |
Probabilistic Noise2Void: Unsupervised Content-Aware Denoising (# 473)
Alexander Krull,
Tomas Vicar,
Mangal Prakash,
Manan Lalit,
Florian Jug,
Pavel Tomancak
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17:30 | 17:45 | |
Bootstrapping Unsupervised Image Denoising with Parametric Noise Models (# 476)
Mangal Prakash,
Manan Lalit,
Pavel Tomancak,
Alexander Krull,
Florian Jug
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17:45 | 18:00 | |
Conference Closing: Announcement of Poster Awards |
18:00 | 18:15 | Room 1 |
Closing Reception |
18:30 | 21:00 | Reception Hall |