QBI 2020 Conference Sessions
6 Jan - 9 Jan
Registration Desk Opens |
08:00 | 18:00 | Registration Desk/Area |
Minisymposium: New Frontiers in Single Molecule Microscopy Session Chair: Susan Cox |
08:30 | 08:50 | Room 1 |
Single Molecule localization microscopy with modulated excitation (# 602)
Pierre Jouchet,
Clement Cabriel,
Nicolas Bourg,
Abigail Illand,
Marion Bardou,
Christian Poüs,
Emmanuel Fort,
Sandrine Leveque-Fort
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08:30 | 08:50 | |
Session: New Frontiers in Single Molecule Microscopy Session Chair: Susan Cox |
08:50 | 10:10 | Room 1 |
Isotropic 3D molecular resolution in cells with MINFLUX nanoscopy (# 272)
Francisco Balzarotti,
Jasmin Pape,
Klaus Gwosch,
Stefan W. Hell
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08:50 | 09:10 | |
Bayesian Grouping of Localizations: Sub-Nanometer Precision, Counting and Resolution Doubling (# 470)
Keith A Lidke
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09:10 | 09:30 | |
Uniting Structured Illumination and Localization Microscopy (SIMFLUX) (# 418)
Carlas Smith
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09:30 | 09:50 | |
Quantifying Localization Accuracy in Single-Molecule Super-Resolution Microscopy (# 282)
Hesam Mazidi,
Tianben Ding,
Arye Nehorai,
Matthew D. Lew
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09:50 | 10:10 | |
Session: Imaging in Immunology Session Chair: Diane Lidke |
08:30 | 10:00 | Room 2 |
Leukocyte mech(n)anobiology: super-resolution microscopy reveals actin nanoscale architecture at cell protrusions (# 387)
Alessandra Cambi,
Koen van den Dries
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08:30 | 08:45 | |
Thermoregulation of immune cell dynamics (# 368)
Stefan Wieser,
Jaime Ortega Arroyo,
Bernard Ciraulo,
Ivan Company Garrido,
Romain Quidant,
Verena Ruprecht
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08:45 | 09:00 | |
Lipid Membrane Sensing and Remodeling during the immune synapse (# 391)
Jorge Bernardino de la Serna,
Esther A. Garcia-Gonzalez
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09:00 | 09:15 | |
Quantitative analysis of macropinocytosis in Dictyostelium captured with light-sheet microscopy (# 419)
Josiah Lutton,
Daniel Moore,
Sharon Collier,
Piotr Baniukiewicz,
Till Bretschneider
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09:15 | 09:30 | |
Single-molecule approach to study mechanical control of B cell antigen recognition (# 398)
Anna Teresa Bajur,
Maria Iliopoulou,
Kaltelyn Spillane
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09:30 | 09:45 | |
Quantifying binding affinities and kinetics of biomolecular complexes with mass photometry (# 463)
Fabian Soltermann,
Weston Struwe,
Philipp Kukura
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09:45 | 10:00 | |
Coffee Break |
10:10 | 10:40 | Foyer |
Minisymposium: Modern Machine Learning Approaches to Image Analysis Uncertainty Quantification in Microscopy Session Chair: Yoav Shechtman |
10:40 | 11:40 | Room 1 |
Deep learning based Phase Microscopy with Uncertainty Quantification (# 517)
Lei Tian,
Yujia Xue,
Shiyi Cheng,
Yunzhe Li
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10:40 | 11:00 | |
Using machine learning to design intelligent computational microscopes (# 518)
Roarke Horstmeyer,
Amey Chaware,
Colin Cooke,
Kanghyun Kim,
Pavan Konda
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11:00 | 11:20 | |
Comprehensive In-situ Profiling of Brain Cellular Alterations in the Injured Brain for Accelerating Drug Discovery (# 412)
Badri Roysam
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11:20 | 11:40 | |
Session: Modern machine learning approaches to image analysis uncertainty quantification in microscopy Session Chair: Christopher P Calderon |
11:40 | 11:55 | Room 1 |
Leveraging Self-Supervised Denoising for Image Segmentation (# 475)
Mangal Prakash,
Tim-Oliver Buchholz,
Manan Lalit,
Pavel Tomancak,
Florian Jug,
Alexander Krull
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11:40 | 11:55 | |
Session: Software Session Chair: Jens Rittscher |
10:40 | 12:10 | Room 2 |
3Dscript: animating 3D/4D microscopy data using a naturallanguage- based syntax. (# 522)
Ralph Palmisano
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10:40 | 10:55 | |
PhenoPlot-Web for visualising microscopy data (# 482)
Andrea Chatrian,
Jens Rittscher,
Heba Sailem
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10:55 | 11:10 | |
CLIJ: GPU-accelerated real-time image analysis is the key to smart microscopy (# 439)
Robert Haase,
Daniela Vorkel,
Akanksha Jain,
Nicola Maghelli,
Pavel Tomancak,
Eugene W. Myers
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11:10 | 11:25 | |
Virtual Reality for Quantification of Multidimensional Single-Molecule Data (# 422)
Thomas Blanc,
Bassam HAJJ,
Mohamed El Beheiry,
Jean-Baptiste Masson
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11:25 | 11:40 | |
Developing microscope software with Python (# 348)
Mick A Phillips,
David Miguel Susano Pinto,
Tiago Susano Pinto,
Richard M Parton,
Chris Weisiger,
Andrew Jefferson,
John W Sedat,
Ilan Davis,
Ian Dobbie
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11:40 | 11:55 | |
Metadata and Performance Tracking for Fluorescent Microscopes (# 506)
Mathias Hammer,
Alex Rigano,
Farzin Farzam,
Andrew Shanaj,
Colton Horman,
Carlas Sierd Smith,
Russell W. Ulbrich,
Caterina Strambio de Castilla,
David Grunwald,
Maximiliaan Huisman
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11:55 | 12:10 | |
Lunch (provided) |
12:00 | 13:30 | Food Area |
QBI Postdoc/Student Chapter: Meet the Expert |
12:00 | 13:30 | Food Area |
Minisymposium: Spatial Statistics in Microscopy Session Chair: Edward Cohen |
13:30 | 15:00 | Room 1 |
Inferring correlation in inhomogeneous and multitype point patterns – a review and new contributions (# 527)
Rasmus Plenge Waagepetersen
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13:30 | 14:00 | |
Bayesian Inference of the Spatial Distribution of Proteins from Three-Cube Förster Resonance Energy Transfer Data (# 586)
Jan-Otto Hooghoudt,
Rasmus Plenge Waagepetersen
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14:00 | 14:20 | |
Quantitative analysis of molecular coupling with SODA (# 625)
Thibault Lagache,
Lydia A Danglot,
Jean-Christophe Olivo-Marin
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14:20 | 14:40 | |
QuantEv: A Quantitative Approach for Analyzing the Spatio-Temporal Distribution of 3D Events in Fluorescence Microscopy (# 526)
Thierry Pecot,
Zengzhen Liu,
Jerome Boulanger,
Jean SALAMERO,
Charles Kervrann
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14:40 | 15:00 | |
Session: Applications in BioPharma Session Chair: Sripad Ram |
13:30 | 15:00 | Room 2 |
Machine learning and airy-light-sheet microscopy reveals morphometric indicators in organoids for informed anti-cancer drug discovery (# 495)
Craig Terence Russell
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13:30 | 13:45 | |
Multiplexed imaging of lung tissue using a macroscopic light sheet fluorescence microscope with uniform axial resolution (# 376)
Arianna Gentile Polese,
Gregory Seedorf,
Leonardo Saunders,
Dominik Stich,
Douglas Parker Shepherd
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13:45 | 14:00 | |
Quantification of bone tissue heterogeneity and cell distribution patterns from digital histology: application to osteosarcoma (# 445)
Anthony Mancini,
Anne Gomez-Brouchet,
Michel quintard,
Sylvie Lorthois,
Pascal Swider,
Pauline Assemat
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14:00 | 14:15 | |
Leveraging Automated Blood Cell Morphology for Myelodysplastic Syndrome Diagnosis and Prognosis Prediction (# 485)
José Guilherme de Almeida,
George Vassiliou,
Moritz Gerstung
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14:15 | 14:30 | |
Image-based nanoparticle characterization to aid drug design (# 367)
Shoh Michael Asano,
Katherine J. Hales
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14:30 | 14:45 | |
Automating FLImP – macromolecular structure fingerprints for personalised cancer therapy (# 339)
Daniel James Rolfe
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14:45 | 15:00 | |
Coffee Break |
15:00 | 16:30 | Foyer |
Poster Session |
15:00 | 16:30 | Poster Area |
Marketing Presentation: AbbeLight Session Chair: Carlas Smith |
16:00 | 16:15 | Room 1 |
Session: Spatial Statistics and Clustering Session Chair: Dylan Owen |
16:30 | 18:30 | Room 1 |
Functional summary statistics for Poisson processes on bounded convex three dimensional shapes (# 516)
Scott Ward,
Edward Cohen,
Niall Adams
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16:30 | 16:45 | |
Generalized Statistical Object Distance Analysis (GSODA) For Object Based Colocalization In Quantitative Microscopy (# 486)
Suvadip Mukherjee,
Thibault Lagache,
Daniel Gonzalez-Obando,
Vannary Meas-Yedid,
Lydia A Danglot,
Jean-Christophe Olivo-Marin
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16:45 | 17:00 | |
Cluster Analysis of Localization Microscopy Data with Machine Learning (# 461)
David Williamson,
Garth Burn,
Sabrina Simoncelli,
Ruby Peters,
Juliette Griffie,
Daniel Davis,
Dylan Owen
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17:00 | 17:15 | |
FOCAL3D: A 3D clustering algorithm for single-molecule localization microscopy (# 371)
Daniel Felipe Nino,
Josh Milstein
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17:15 | 17:30 | |
Toward Absolute Molecular Numbers in DNA-PAINT (# 313)
Johannes Stein,
Florian Stehr,
Patrick Schueler,
Philipp Blumhardt,
Florian Schueder,
Jonas Muecksch,
Ralf Jungmann,
Petra Schwille
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17:30 | 17:45 | |
Molecular counting with calibrated fluorescent labelling and photobleaching step analysis (# 493)
Klaus Yserentant,
Johan Hummert,
Felix Braun,
Wioleta Chmielewicz,
Dirk-Peter Herten
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17:45 | 18:00 | |
Stoichiometric quantification of spatially dense assemblies with qPAINT (# 317)
Daniel J Nieves
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18:00 | 18:15 | |
Statistical modeling of spatial interactions in biological patterns, with application to plant nuclear organization (# 489)
Javier Arpon,
Kaori Sakai,
Valérie Gaudin,
Philippe Andrey
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18:15 | 18:30 | |
Session: 3D methods Session Chair: Matthew D. Lew |
16:30 | 18:30 | Room 2 |
3D model-based restoration methods for 3D-SIM (# 320)
Cong Tuan Son Van,
Chrysanthe Preza,
Hasti Shabani
|
16:30 | 16:45 | |
4Pi-SMLM and the 3D architecture of the Nuclear Pore Complex (# 384)
Mark Bates
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16:45 | 17:00 | |
Off-focus imaging exploits supercritical-angle fluorescence emission for precise SMLM (# 397)
Alexander Jesacher,
Philipp Zelger,
Lisa Bodner,
Lukas Velas,
Gerhard Schütz
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17:00 | 17:15 | |
Analysis of relative positions in 3D PALM and dSTORM provides high-resolution information on ordered biological complexes (# 441)
Alistair Curd,
Ruth Hughes,
Michelle Peckham
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17:15 | 17:30 | |
Selective volumetric microcopy for single molecule imaging in living cells (# 421)
Tommaso Galgani,
Remi Galland,
Virgile Viasnoff,
Jean-Baptiste Sibarita,
Bassam HAJJ
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17:30 | 17:45 | |
3D Multicolor Nanoscopy at 10,000 Cells a Day (# 299)
Andrew E S Barentine,
Yu Lin,
Miao Liu,
Phylicia Kidd,
Leonhard Balduf,
Michael Grace,
Siyuan Wang,
Joerg Bewersdorf,
David Baddeley
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17:45 | 18:00 | |
High-throughput multicolor 3D localization in live cells by depth-encoding imaging flow cytometry (# 335)
Lucien E Weiss,
Yael Shalev Ezra,
Sarah Goldberg,
Boris Ferdman,
Onit Alalouf,
Yoav Shechtman
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18:00 | 18:15 | |
3D-SRRF: Real-Time Live-Cell-Compatible Volumetric Super-Resolution Microscopy (# 426)
Romain F Laine,
Tommaso Galgani,
Bassam HAJJ,
Ricardo Henriques
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18:15 | 18:30 | |
Dinner Break (on own) |
18:30 | 20:30 | (on own) |
Workshop: Introduction to programming for microscopy image analysis Session Chair: Anish V. Abraham |
18:30 | 21:30 | Room 1 |
QBI Society Meeting Session Chair: Raimund Ober |
20:30 | 22:00 | Room 2 |