Glycine receptor copy numbers and packing density at spinal cord synapses revealed by quantitative dual-colour super-CLEM

Stephanie Maynard, Olivier Gemin, Philippe Rostaing, Antoine Triller, Christian G Specht
ENS,

Untying the Gordian Knot: Spatiotemporal Single Particle Tracking using Point Cloud Reduction

Jorge A Zepeda O, Logan D Bishop, Suparna Sarkar-Banerjee, Chayan Dutta, Christy Landes
Rice University,

Multivariate spectral analysis for identification of spectral features of peripheral nerves using Raman microspectroscopy

Takeo Minamikawa, Yoshiki Terao, Ryosuke Shiomi, Takeshi Yasui
Tokushima University,

Joint denoising deconvolution

Jerome Boulanger, Nick Barry, Suman Kumar Maji
MRC-LMB, Cambridge, US

Phase Retrieval and Point Spread Function Design for Single Molecules Based on the Vectorial Diffraction Model

Boris Ferdman, Lucien E Weiss, Elias Nehme, Yoav Shechtman
Technion – Israel Institute of Technology, Adi, IL

BioImage-IT

Sylvain Prigent, Charles Kervrann, Jean SALAMERO
Inria, Rennes, FR

3D tracking of endocytic and exocytic events using lattice light sheet microscopy

Cesar Augusto VALADES CRUZ, Ludovic LECONTE, Christian Wunder, Charles Kervrann, Ludger Johannes, Jean SALAMERO
Institut Curie, Paris, FR

An image-based machine learning approach as screening tool of pathological calcium oxalate crystallization inhibitors

Anna Kletzmayr, Jean-Christophe Leroux, Mattias E. Ivarsson
ETH Zurich,

Simulation and implementation of digital micromirror devices (DMDs) for cost-effective structured illumination microscopy

Alice Sandmeyer, Mario Lachetta, Hauke Sandmeyer, Wolfgang Hübner, Thomas Huser, Marcel Müller
Bielefeld University, Leuven, BE

Conquering the tumour microenvironment: Using image analysis and spatial statistics to map the phenotypic heterogeneity of human cancers

Jack Robertson, Guillaume Potdevin, Brenda Beatriz Garcia Iglesias, Fargol Mazaheri, Maria Udriste, Stephanie Ling, Edmond Wong, Richard Goodwin, Hadassah Sade, Jaime Rodriguez Canales, Guenter Schmidt, Andrew Pierce
Astra Zeneca,

Organization and dynamics of Escherichia coli outer membrane proteins

Patrick George Inns, Nicholas Housden, Joanna Szczepaniak, Renata Kaminska, Colin Kleanthous
University of Oxford,

Automated lens-free, fluorescent microscopy to study cell populations

Dorothee Kraemer, Cédric Allier, Lionel Hervé, Kiran Padmanabhan, Adlen Foudi, Sophie Morales
CEA-LETI,

Multi-parameter Single Molecule Spectroscopy Imaging Reveals Intra- and Inter- Molecular Conformations of HIV-1 Envelope on Native Viruses

Irene Carlon-Andres, Sergi Padilla-Parra
University of Oxford,

Towards multi-dimensional FLImP

Michail Vrettas, Daniel James Rolfe, Ben Davis
STFC,

Breaking New Ground in Live and Label-free Volumetric Imaging

Niall Hanrahan, Simon Lane, Raquel Munoz, Sumeet Mahajan
University of Southampton, Southampton, GB

User-friendly Building of Reconstruction Algorithms with GlobalBioIm

Laurène Donati, Emmanuel Soubies, Michael Unser
EPFL,

SpineJ: A software tool for quantitative analysis of nanoscale spine morphology

Florian Levet, Jan Tonnesen, Valentin Nägerl, Jean-Baptiste Sibarita
Interdisciplinary Institute for NeuroScience, Bordeaux, FR

High density 3D localization of fluorescent molecules

Valentin Debarnot, Thomas Mangeat, Pierre Weiss
ITAV, CNRS, Toulouse, FR

DeepSTORM3D: Deep learning for dense 3D single molecule localization microscopy

Elias E Nehme, Daniel Freedman, Racheli Gordon, Boris Ferdman, Lucien E Weiss, Onit Alalouf, Reut Orange, Tomer Michaeli, Yoav Shechtman
Technion - Israel Institute of Technology, Haifa, IL

DeepSTORM3D: Deep learning for dense 3D single molecule localization microscopy

Elias E Nehme, Daniel Freedman, Racheli Gordon, Boris Ferdman, Lucien E Weiss, Onit Alalouf, Reut Orange, Tomer Michaeli, Yoav Shechtman
Technion - Israel Institute of Technology, Haifa, IL

Creating interactive, explorable simulations of cell migration at tissue scale using CPMjs

Inge M N Wortel, Johannes Textor
Radboud Institute for Molecular Life Sciences,

High-Throughput Structured Illumination Microscopy (HiT-SIM)

Robin Van den Eynde
KU Leuven,

Quantitative comparison of camera technologies for cost-effective super-resolution optical fluctuation imaging (SOFI)

Robin Van den Eynde
KU Leuven,

Quantitative image-analysis of organoids with high-throughput digital holography microscopy

Thanh-an Pham, Nathalie Brandenberg, Sylke Hoehnel, Benjamin Rappaz, Michael Unser, Matthias Lütolf, Daniel Sage
EPFL, St-Sulpice, CH

Localization microscopy shows the 3D organization of LPS in the Escherichia coli outer-membrane

Sandip Kumar
University of Oxford,

An LPV approach to the estimation of time-varying Single Particle Tracking models

Boris I Godoy, Nicholas Vickers, Sean Andersson
Boston University, Boston, US

The dual approach to non-negative super-resolution

Bogdan Toader
University of Cambridge,

Model-based Imaging Biomarkers for Non-rectangular Regions of Interest

ShengLi Tzeng
National Sun Yat-sen University,

Feature representations for the identification of mRNA localization patterns from smFISH data

Arthur Imbert, Edouard Bertrand, Florian Mueller, Thomas Edgar Walter
Mines ParisTech,

Axial stimulated emission depletion spectroscopy to study lipid dynamics

Aurélien Barbotin, Iztok Urbancic, Martin Booth, Christian Eggeling, Erdinc Sezgin
University of Oxford, Oxford, GB

Method of Synthetic Motion for Testing Single Particle Tracking Microscopes

Nicholas Vickers, Sean Andersson
Boston University, Quincy, US

Quantitative analysis of the structural organization and diffusion properties of a bacterial biofilm matrix

Valentin Dunsing, Tobias Irmscher, Stefanie Barbirz, Salvatore Chiantia
University of Potsdam, Berlin, DE

Single-Cell / Single-Molecule microscopy on endogenous pulsed-labeled p53 dissects the regulation layers involved in its activation

Eugenia Cammarota, Alessia Loffreda, Matteo Mazzocca, Valeria Caiolfa, Moreno Zamai, Carlo Tacchetti, Davide Mazza
Ospedale San Raffaele,

A comprehensive system calibration protocol for widefield fluorescence microscopy

Sreevidhya Ramakrishnan, Jerry Chao, Anish V Abraham, Sungyong You, Raimund Ober
Texas A&M University,College Station, College Station, US

Analysis of Nieman Pick C2 Protein in Regulation of Intracellular Membrane Transport by Combined and Correlative Fluorescent and Soft X-ray Microscopy

Alice Dupont Juhl, Daniel Wüstner
The University of Southern Denmark, Årslev, DK

Edge correction in density estimation from repeated point patterns in biological imaging

Jasmine Burguet, Philippe Andrey
INRA, Versailles, FR

Quantitative Analysis of Spatial-Temporal Imaging of Auxin to Cytokinin Ratio During Nodule Development in Soybean (Glycine max) by Two-Photon Induced Fluorescence

Ni Putu Dewi Nurmalasari, Paul Gaillard, Senthil Subramanian, Steve Smith
South Dakota School of Mines and Technology,

Investigating spatial relationships of host-associated microbes using correlative light and electron microscopy

Martin Thomas Jahn
GEOMAR Helmholtz Centre for Ocean Research,

3D TIRF nanoscopy with sub-10 nm resolution

Sabrina Simoncelli, Alan Szalai, Brueno Siarray, Jeronimo Lukin, David Williamson, Nicolas Unsain, Damian Refojo, Alfredo Caceres, Mauricio Pilo-Pais, Guillermo Acuna, Dylan Owen, Fernando Stefani
King's College London,

4Pi aberration correction in single molecule switching microscopy

Jingyu Wang, Martin Booth, Ian Dobbie, Jacopo Antonello, Mick A Phillips, Richard M Parton, Chao He
University of Oxford,

A universal framework for sensorless adaptive optics

Qi Hu, Jingyu Wang, Matthew Wincott, Jacopo Antonello, Martin Booth
University of Oxford,

Implementation of Confocal Adaptive Optical Microscopy for Clinical Tissue Analysis

Jiahe Cui, Raphael Turcotte, Karen M Hampson, Martin Booth
University of Oxford,

Deciphering genuine transient pauses in super-localized trajectories of single-molecule tracers

Jaladhar Mahato, Arindam Chowdhury
Indian Institute of Technology Bombay,

Calibration of a Remote Focusing Microscope Using Deflectometry

Syed Asad Hussain, Karen M Hampson, Matthew Wincott, Jacopo Antonello, Martin Booth
University of Oxford,

Quantification of DNA by Mass Photometry

Yiwen Li, Katharina Haeussermann, Weston Struwe, Philipp Kukura
University of Oxford,

Site-selective visualization and tracking of DNA methylation in fixed cells

Krystian Ubych, Paco Fernandez-Trillo, Clare Davies, Robert Neely
University of Birmingham,

Ultrashort dual colour laser at 1.55 and 1.88 μm for the detection of tumour through Raman imaging

Syed Asad Hussain
University of Oxford,

ConCoR: A software pipeline for high-throughput image analysis of time-dependent colocalization data

Greg Bass, Isabelle Glauser, Jenny Chia, Anne Verhagen, Steve Dower, Milica Ng
CSL Innovation,

FCS and anomalous diffusion model as tools to monitor molecular interactions in living cells

Alessandro Furlan, Aymeric Leray, Melanie Henry, Mariano Gonzalez Pisfil, Dorian champelovier, Thorsten Wohland, Corentin Le Nezet, Olivier Benbsude, Bernard Vandenbunder, Gabriel Bidaux, Laurent HELIOT
Univ-Lille,

Statins – not just about cholesterol reduction

Dilip Shrestha
University of Oxford,

Epidermal growth factor receptor localization and dynamics inside nanodomains across different cell types

Thuy Thi HOANG, Nicolas Olivier, Hélène Lazareth, Pierre-Louis Tharaux, Cedric Bouzigues, Antigoni Alexandrou
école polytechnique,

ALFRED: user-friendly approach to obtain length and curvature and its application to microtubule networks in nerve cells

Beatriz Costa-Gomes, Nuno Nobre, André Voelzmann, Matthias Heil, Andreas Prokop
University of Manchester,

3D Model Building Pipeline for Light-Sheet Imaging of Hippocampal Neurons for Simulation and Analysis of Calcium Dynamics

James Barnard Wilsenach, Charlotte M. Deane, Gesine Reinert
University of Oxford,

Extending molecular counting by photon statistics

Johan Hummert, Klaus Yserentant, Wioleta Chmielewicz, Dirk-Peter Herten
Heidelberg University, Berlin, DE

Cell segmentation and tracking for mathematical modelling of cell motility

Rituparna Sarkar, Pascal Bochet, Maria Manich, Aleix Boquet-Pujadas, Nancy Gullien, Elisabeth Labruyere, Jean-Christophe Olivo-Marin
Institute Pasteur,

Investigating membrane proteins interactions and membrane mimetic systems using mass photometry

Anna Olerinyova, Philipp Kukura, Weston Struwe, Adar Sonn Segev
University of Oxford,

Adaptive optics in bioimaging for improved quantitative exploitation of microscopy images

Audrius Jasaitis, Cynthia Veilly, Fabrice Harms, Xavier Levecq
Imagine Optic,

Characterization of Flat-Fielding Systems for Super-Resolution Microscopy

Khalid Ibrahim, Dora Mahecic, Suliana Manley
Ecole Polytechnique Federale de Lausanne,

Quantitative imaging of sparse targets with DNA-PAINT

Alexander H Clowsley, Christian Soeller
The University of Exeter,

Towards a molecular mechanism of dynamin polymerization with mass photometry

Manish Singh Kushwah, Philipp Kukura
University of Oxford,

Biolapse Toolbox

Léo Lebrat, Valentin Debarnot, Thomas Mangeat
CSIRO Health and Biosecurity Flagship: The Australian e-Health Research Centre Brisbane, QLD, Australia,

Single-molecule and super-resolution investigation of chemokine receptor behaviour within the T cell immunological synapse

James Felce, Michael Loran Dustin
University of Oxford,

ICYTOMINE: A User-Friendly Tool for Reproducible Analysis of Gigapixel Images

Daniel Felipe González Obando, Diana Mandache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
Institut Pasteur,

Full field interferometry for characterizing and counting biotic nanoparticles

Samer Alhaddad, Yasmina Fedala, Ignacio Izeddin, Claude Boccara, Martine Boccara
ESPCI, PSL University, CNRS,

Quantitative mapping of fluorescently tagged ribosomes throughout the cell cycle of S. cerevisiae using FCS-calibrated imaging

Madlen Luckner, Gabriele Schreiber, Edda Klipp, Salvatore Chiantia
University of Potsdam,

Versatile uniform illumination method toward quantitative single molecule localization microscopy

Adrien - Mau, Nicolas Bourg, Sandrine Leveque-Fort
Ismo / Abbelight,

Computational analysis of filament polymerization dynamics in cytoskeletal networks

Paulo Caldas, Christoph Sommer, Philipp Radler, Martin Loose
Institute of Science and Technology Austria,

Metadata and Performance Tracking for Fluorescent Microscopes III - MetaMax

Maximiliaan Huisman, Carlas Sierd Smith, Mathias Hammer, Russell W. Ulbrich, David Grunwald
UMass Medical School, WORCESTER, US

Metadata and Performance Tracking for Fluorescent Microscopes I - Metadata

David Grunwald, Mathias Hammer, Alex Rigano, Maximiliaan Huisman, Farzin Farzam
UMass Chan Medical School, Worceser, US

Metadata and Performance Tracking for Fluorescent Microscopes II - Optics

David Grunwald, Mathias Hammer, Maximiliaan Huisman, Farzin Farzam
UMass Chan Medical School, Worceser, US

Towards Quantitative 3D Super-Resolution Correlative Light-Electron Microscopy

Jonas Euchner, Klaus Yserentant, Dirk-Peter Herten
Universität Heidelberg,

Pixelwise H-score: a novel digital image analysis-based metric to quantify membrane biomarker expression from IHC images

Sripad Ram
Pfizer, Inc., , United States

Label-free intracellular dynamics studies using quantitative phase imaging with a high definition wavefront sensor

Roman Zinchuk, Benoit Wattellier, Antoine Federici, Julien Savatier, Serge Monneret
Aix-Marseille Univ, CNRS, Centrale Marseille, Institut Fresnel,

Predicting Patient Outcome from Immunohistochemistry Images by Quantifying Spatial Distribution of Immune Cells

Morgan Oneka, Jenny Lazarus, Souptik Barua, Arvind Rao, Timothy Frankel
University of Michigan,

Persistent Homology for the Spatial Characterisation of Tumour Blood Vessel Networks

Bernadette Jana Stolz
EPFL,

Quantifying the heterogeneity of macromolecular machines by mass photometry

Adar Sonn Segev, Katarina Belacic, Tatyana Bodrug, Gavin T Young, Nicholas G. Brown, David Haselbach, Philipp Kukura
University of Oxford,

Dissecting the Single-Cell Dynamics of Xist RNA in X Chromosome Inactivation by 3D Structured Illumination Microscopy

Lisa Selina Rodermund
Oxford University,

Leveraging Molecular and Cellular Fiducial Markers for Correlative Bio-Imaging

Chidinma Adanna Okolo, Ilias Kounatidis, Thomas M Fish, Perrine Paul-Gilloteaux, Ian Dobbie, Maria Harkiolaki
Diamond Light Source,

Cryo 3D Correlation imaging for studies of host-pathogen interactions; the case of Staphylococcus aureus clearance by primary macrophages

Ilias Kounatidis, Maria Harkiolaki, Petros Ligoxygakis
Diamond Light Source,

Combining spatial statistics to describe localisation of tumour associated macrophages in digital pathology

Joshua A Bull
University of Oxford,

Morphological analysis of images of dried droplets of saliva for determination the degree of endogenous intoxication

Peter (Petr) V. Lebedev-Stepanov, Marina Buzoverya, Konstantin Vlasov, Yulia Potekhina
Russian Academy of Sciences,