QBI 2019 Conference Sessions

9 Jan - 11 Jan

Start End Location

Registration: Workshops

08:00 16:00 Foyer (Hall 1)

Workshop: Adaptive Optics

08:30 10:45 Lecture Room 2 (Dortoir)

Coffee Break

10:45 11:00 Foyer (Hall 1)

Workshop: Machine Learning

11:00 12:30 Lecture Room 2 (Dortoir)

Machine learning workshop: an introduction to machine learning and a taste of advanced methods

Seth Flaxman
Imperial College London, Oxford, GB

11:00 12:30

Lunch Break

12:30 13:30 (on own)

Workshop: Machine Learning continued

13:30 16:45 Lecture Room 2 (Dortoir)

Machine learning workshop: an introduction to machine learning and a taste of advanced methods

Seth Flaxman
Imperial College London, Oxford, GB

13:30 14:30

Large-Scale Optimization for Machine Learning

Julien Mairal
Inria, Montbonnot, FR

14:30 15:45

Introduction to deep learning (# 228)

Christophe Zimmer
Institut Pasteur, Paris, FR

15:45 16:45

Coffee Break

16:45 17:15 Foyer (Hall 1)

Workshop: 3D Super resolution Microscopy

17:15 19:15 Lecture Room 2 (Dortoir)

Registration Desk Opens: Main Conference

17:15 21:15 Foyer (Hall 1): Registration Area

Opening Reception

18:15 20:30 Foyer (Hall 1)
Start End Location

Registration Desk Opens

08:00 20:30 Foyer (Hall 1): Registration Area

Opening Remarks

08:15 08:30 Lecture Room 1 (NEF)

Lecture (Machine Learning theme)

Session Chair: Charles Kervrann

08:30 09:10 Lecture Room 1 (NEF)

Sparse modeling of data and deep learning

Michael Elad
Technion - Israel Institute of Technology, Haifa, IL

08:30 09:10

Lecture (Machine Learning theme)

Session Chair: Charles Kervrann

09:10 09:40 Lecture Room 1 (NEF)

Content-aware image restoration for light and electron microscopy

Florian Jug
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, DE

09:10 09:40

Lecture (Single Molecule Microscopy theme)

Session Chair: Susan Cox

09:40 10:10 Lecture Room 1 (NEF)

Fixation and sample processing issues for super-resolution microscopy (# 157)

Silvio Rizzoli
University Medical Centre Goettingen, , Germany

09:40 10:10

Coffee Break

10:10 10:40 Foyer (Hall 1)

Hamamatsu Photonics Workshop I

10:40 17:00 Les Horizons

Minisymposium: Machine learning in bioimage analysis and microscopy

Session Chair: Christopher P Calderon

10:40 11:40 Lecture Room 1 (NEF)

Label-free Prediction of Subcellular Organization: Capturing Variation and Integrating Observations (# 236)

Chawin Ounkomol, Sharmishtaa Seshamani, Forrest Collman, Mary (Molly) M Maleckar, Gregory R Johnson
Allen Institute for Cell Science, Seattle, US

10:40 11:00

Unraveling the Rules of Life a few photons at a time (# 166)

Steve Pressé
Arizona State University, Tempe, US

11:00 11:20

Computational boosts to single molecule localization microscopy (# 207)

Christophe Zimmer
Institut Pasteur, Paris, FR

11:20 11:40

Session: Single Molecule Microscopy

Session Chair: Susan Cox

11:40 12:25 Lecture Room 1 (NEF)

Data fusion for localization microscopy

Bernd Rieger
TU Delft, Delft, NL

11:40 11:55

Nuclear pores as universal reference standards for quantitative microscopy (# 145)

Jonas Ries
EMBL, Heidelberg, DE

11:55 12:10

Artefact free high density localisation microscopy analysis (# 66)

Richard John Marsh
King's College London, London, GB

12:10 12:25

Session: Optical Methods Developments

Session Chair: Sjoerd Stallinga

10:40 11:55 Lecture Room 2 (Dortoir)

Super-resolution imaging of unlabeled living cells using superoscillatory polarization contrast (# 120)

Edward T F Rogers, Shmma Quraishe, Katrine Rogers, Tracey Newman, Peter Smith, Nikolay Zheludev
University Of Southampton, Southampton, GB

10:40 10:55

Single-shot fluorescence holography for 3D tracking in live cells (# 85)

Matz Liebel, Jaime Ortega Arroyo, Vanesa Sanz, Johann Osmond, Romain Quidant, Niek van Hulst
ICFO -The Institute of Photonic Sciences, Castelldefels, ES

10:55 11:10

Simple and compact microscope for time-lapse phase and fluorescence imaging based on chromatic aberration (# 106)

Ondrej Mandula, Cédric Allier, Sophie Morales, Jean-Philippe Kleman, Francoise Lacroix, Lionel Hervé
CEA-Leti, Grenoble Cedex 9, FR

11:10 11:25

Speed OPIOM (Out-of-Phase Imaging after Optical Modulation) for quantitative multiplexed fluorescence imaging against autofluorescence under ambient light (# 111)

Ruikang Zhang, Raja Chouket, Marie Aude Plamont, Zsolt Kelemen, Agathe Espagne, Alison Tebo, Arnaud Gautier, Lionel Gissot, Jean-Denis Faure, Ludovic Jullien, Vincent Croquette, Thomas le Saux
Ecole Normale Superieure, Paris, FR

11:25 11:40

Methods and applications of quantitative dynamic full-field coherence tomography (# 191)

Jules Scholler, Kassandra Groux, Claude Boccara, Kate Grieve
ESPCI, Paris, FR

11:40 11:55

Session: Biological Applications of Optical Developments

Session Chair: Sjoerd Stallinga

11:55 12:25 Lecture Room 2 (Dortoir)

LIESS-FCS: spatially resolved diffusion modes measured by STED nanoscopy (# 38)

Falk Schneider, Dominic Waithe, Erdinc Sezgin, Christian Eggeling
University of Oxford, Oxford, GB

11:55 12:10

Adaptive optics allows 3D STED-FCS measurements in the cytoplasm of living cells (# 108)

Aurélien Barbotin, Silvia Galiani, Iztok Urbančič, Christian Eggeling, Martin Booth
University of Oxford, Oxford, GB

12:10 12:25

Lunch (provided)

12:25 13:45 Foyer (Hall 1): Food Area

Pair Talk

Session Chair: E. Sally Ward

13:45 14:25 Lecture Room 1 (NEF)

Structure and dynamics of endosomes analyzed by imaging-based methods (# 181)

Marino Zerial
MPI-CBG, Dresden, DE

13:45 14:05

Structure and dynamics of endosomes analyzed by imaging-based methods (# 188)

Yannis Kalaidzidis
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, DE

14:05 14:25

Lecture (Software development theme)

Session Chair: Raimund J Ober

14:25 14:55 Lecture Room 1 (NEF)

The ImageJ ecosystem: An open platform for biomedical image analysis.

Kevin W Eliceiri
University of Wisconsin at Madison, Madison, US

14:25 14:55

Lecture (Past chair lecture)

Session Chair: Raimund J Ober

14:55 15:15 Lecture Room 1 (NEF)

About the optimal optical transfer function of a microscope (# 27)

Jörg Enderlein
Georg August University, Göttingen, DE

14:55 15:15

Coffee Break

15:15 16:45 Foyer (Hall 1)

Poster Session: Single Molecule Microscopy Methods Development

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Optical Methods Developments

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Applications of Single Molecule Microscopy

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Single Molecule Microscopy Experimental Approaches

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Biological Applications of Optical Developments

15:15 16:45 Foyer (Hall 1): Poster Area

Marketing Session: Oxford NanoImaging

16:25 16:40 Lecture Room 2 (Dortoir)

Minisymposium: Software design for microscopy hardware control

Session Chair: Raimund J Ober

16:45 18:45 Lecture Room 1 (NEF)

Why to automate your microscope and how to control it (# 158)

Winfried Wiegraebe, Mark Bates, Francisco Balzarotti
Allen Institute for Cell Science, Seattle, US

16:45 18:45

Session: Applications of Single Molecule Microscopy

Session Chair: Diane Lidke

16:45 17:30 Lecture Room 2 (Dortoir)

Unraveling molecular arrangement of synaptic proteins with multiple color super resolution microscopy ans statistical object distance analyse with icy soda (# 42)

Thibault Lagache, Philippe Bun, Stephane Dallongeville, Alexandre Dufour, Jean-Christophe Olivo-Marin, Thierry Galli, Lydia A Danglot
Institute of Psychiatry & Neurosciences of Paris, PARIS, FR

16:45 17:00

Multiscale computational modelling of chromatin three-dimensional structure using iPALM microscopic high-resolution images (# 80)

Zofia Anna Parteka, Dariusz Plewczyński
Centre of New Technologies, University of Warsaw, Warsaw, PL

17:00 17:15

A quantitative look at cellular oligonucleotide delivery (# 81)

Leontien van der Bent, Natalia Feiner, R. Alis Olea, Johanna Berndt, Derick Wansink, Lorenzo Albertazzi, Roland Brock
Radboud University Medical Center, Nijmegen, NL

17:15 17:30

Session: Single Molecule Microscopy Experimental Approaches

Session Chair: Bernd Rieger

17:30 18:30 Lecture Room 2 (Dortoir)

Imaging complex protein machines by high-throughput localization microscopy (# 34)

Joran Deschamps, Markus Mund, Jonas Ries
EMBL, Heidelberg, DE

17:30 17:45

Multi-color cryo-fluorescence microscopy (# 67)

Maximiliaan Huisman, Farzin Farzam, David Grunwald
UMass Medical School, WORCESTER, US

17:45 18:00

Wide depth reproducible multicolor bioimaging through a combination of 3D single molecule localization strategies (# 82)

Clement Cabriel, Nicolas Bourg, Pierre Jouchet, Guillaume Dupuis, Christophe Leterrier, Aurélie Baron, Boris Vauzeilles, Emmanuel Fort, Sandrine Leveque-Fort
ISMO-CNRS, ORSAY, FR

18:00 18:15

A tilted light sheet for single-molecule super-resolution imaging in thick cells (# 110)

Petar N Petrov, Anna-Karin Gustavsson, Yoav Shechtman, Maurice Lee, W. E. Moerner
Stanford University, Stanford, US

18:15 18:30

QBI Student/Post-doc Chapter Inaugural Meeting

18:45 19:30 Location TBD

Opening Reception and Poster Viewing

18:45 22:15 Foyer (Hall 1)
Start End Location

Registration Desk Opens

08:00 18:30 Foyer (Hall 1): Registration Area

Lecture (Quantitative tools for subcellular trafficking)

Session Chair: Daniel Wüstner

08:30 09:20 Lecture Room 1 (NEF)

Using microscopy to dissect endolysosomal trafficking and function (# 214)

Frederick Maxfield
Weill Cornell Medical College, New York, US

08:30 09:20

Tutorial (Correlative imaging)

Session Chair: Daniel Wüstner

09:20 09:50 Lecture Room 1 (NEF)

Correlative light - electron microscopy: approaches, applications and outlook

Judith Klumperman
University Medical Center Utrecht, , The Netherlands

09:20 09:50

Lecture (Imaging for BioPharma applications theme)

Session Chair: Sripad Ram

09:50 10:30 Lecture Room 1 (NEF)

Analyzing three-dimensional biological specimens observed with light sheet microscopy under near-natural conditions (# 167)

Ernst HK Stelzer
Goethe-Universität Frankfurt am Main, Frankfurt am Main, DE

09:50 10:30

Poster Award Lecture

Session Chair: Susan Cox

10:30 10:40 Lecture Room 1 (NEF)

Measuring the absolute degree of labeling for self-labeling protein tags (# 116)

Klaus Yserentant, Felix Braun, Siegfried Hänselmann, Wioleta Chmielewicz, Johan Hummert, Florian Salopiata, Dirk-Peter Herten
Heidelberg University, Heidelberg, DE

10:30 10:40

Tribute to Maxime Dahan by Bassam Hajj (Institut Curie Paris)

10:40 10:50 Lecture Room 1 (NEF)

Coffee Break

10:50 11:15 Foyer (Hall 1)

Hamamatsu Photonics Workshop II

11:15 17:00 Les Horizons

Minisymposium: Quantitative tools to define subcellular trafficking processes

Session Chair: E. Sally Ward

11:15 12:15 Lecture Room 1 (NEF)

Lectin-driven and glycosphingolipid-dependent construction of endocytic pits (# 162)

Ludger Johannes
Institut Curie, Paris Cedex 05, FR

11:15 11:35

Quantitative visualization of SNARE complex formation in living cells (# 185)

Geert van den Bogaart
University of Groningen, Groningen, NL

11:35 11:55

Fluorescence studies of sterol transport between cellular membranes (# 221)

Daniel Wüstner
The University of Southern Denmark, Odense, DK

11:55 12:15

Session: Machine Learning in Single Molecule Microscopy and Deconvolution

Session Chair: Christophe Zimmer

11:15 12:15 Lecture Room 2 (Dortoir)

Deep learning for dense and multicolor localization microscopy (# 15)

Elias Nehme, Eran Hershko, Lucien Weiss, Tomer Michaeli, Yoav Shechtman
Technion, Israel Institute of Technology, Haifa, IL

11:15 11:30

3D ConvNets improve macromolecule localization in 3D cellular cryo-electron tomograms (# 61)

Emmanuel Moebel, Charles Kervrann
Inria, Rennes, FR

11:30 11:45

Single molecule at the age of big data: probabilistic pipeline and unsupervised learning (# 143)

Francois Laurent, Alexander Serov, Christian Vestergaard, Jean-Baptiste Masson
Institut Pasteur, Paris, FR

11:45 12:00

Semi-blind spatially-variant deconvolution and focus estimation in optical microscopy by use of convolutional neural networks (# 50)

Adrian Shajkofci, Michael Liebling
Idiap Research Institute, Martigny, CH

12:00 12:15

Lunch (provided)

12:10 13:30 Foyer (Hall 1): Food Area

Pair Talk

Session Chair: Diane Lidke

13:30 14:10 Lecture Room 1 (NEF)

Uncovering transients in single molecule motion: Application to cell surface proteins (# 163)

Anthony Vega, Spencer Freeman, Sergio Grinstein, Khuloud Jaqaman
UT Southwestern Medical Center, Dallas, US

13:30 13:50

Transmembrane pickets corral bystanders in the plasma membrane by tethering to the submembrane cytoskeleton (# 194)

Khuloud Jaqaman, Sivakami Mylvaganam, Anthony Vega, Sergio Grinstein, Spencer Freeman
Hospital for Sick Children, Toronto, CA

13:50 14:10

Session: Application of Image Analysis Approaches

Session Chair: Jean-Christophe Olivo-Marin

13:30 15:00 Lecture Room 2 (Dortoir)

High content cell classification and tracking improvement by morphology and quantitative phase feature combination (# 39)

Benoit Wattellier, Sherazade Aknoun, Manuel Yonnet, Fabrice Valentino, Djamel Brahmi, Michel Barlaud, Philippe Pognonec, Thierry Pourcher
PHASICS, SAINT AUBIN, FR

13:30 13:45

Two dynamic behaviors of the microtubules at the cell cortex reveal the pulling and pushing forces that position the mitotic spindle in C. elegans embryos (# 47)

Hélène Bouvrais, Danielle Fairbrass, Laurent Chesneau, Nina Soler, Yann Le Cunff, Thierry Pécot, Charles Kervrann, Jacques Pécréaux
Institut de Génétique et Développement de Rennes (IGDR) - UMR 6290, Rennes, FR

13:45 14:00

Investigating the spatio-temporal patterning of neural stem cell activation events (# 105)

Sebastien Herbert, Nicolas Dray, Laure Mancini, Willy Supatto, Jean-Yves Tinevez, Jean-Baptiste Masson, Laure Bally-Cuif
Institut Pasteur Paris, Paris, FR

14:00 14:15

Quantitative analysis of collagen microstructure in vitro and in vivo by means of multi-phasor analysis of second harmonic generation microscopy. (# 23)

Giuseppe Chirico, laura D'Alfonso, MAddalena Collini, Margaux Bouzin, Riccardo Scodellaro, laura Sironi
Universita' di Milano-Bicocca, Milano, IT

14:15 14:30

Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis (# 54)

Faïçal Selka, Thomas Blein, Jasmine Burguet, Eric Biot, Patrick Laufs, Philippe Andrey
INRA, Versailles, FR

14:30 14:45

Segmentation of 3D images of plant tissues at multiple scales using the level set method (# 115)

Annamaria Kiss, Typhaine Moreau, Vincent Mirabet, Cerasela Iliana Calugaru, Arezki Boudaoud, Pradeep Das
ENS de Lyon, Lyon, FR

14:45 15:00

Session: Sample Methods Development

Session Chair: Dirk-Peter Herten

14:10 14:55 Lecture Room 1 (NEF)

DNA origami as a nanoscale platform for T-cell activation (# 28)

Joschka Peter Hellmeier, Eva Sevcsik
TU Vienna, Vienna, AT

14:10 14:25

Characterisation of GFP and derivatives for super-resolution cryogenic single molecule localisation microscopy (# 100)

Amy N Moores, Lin Wang, Laura Zanetti-Domingues, Benji Bateman, Marisa Martin-Fernandez
STFC, Didcot, GB

14:25 14:40

Novel tetrazine probes for fluorogenic protein labeling (# 125)

Felix Braun, Philipp Werther, Klaus Yserentant, Achim Wieczorek, Richard Wombacher, Dirk-Peter Herten
Heidelberg University, Heidelberg, DE

14:40 14:55

Coffee Break

14:50 16:20 Foyer (Hall 1)

Poster Session: Applications in Biopharma

14:50 16:20 Foyer (Hall 1): Poster Area

Poster Session: Machine Learning

14:50 16:20 Foyer (Hall 1): Poster Area

Poster Session: Application of Image Analysis Approaches

14:50 16:20 Foyer (Hall 1): Poster Area

Poster Session: Sample Methods Developments

14:50 16:20 Foyer (Hall 1): Poster Area

Poster Session: Instrument Characterization

14:50 16:20 Foyer (Hall 1): Poster Area

Poster Session: Data Analysis Methods Development for Single Molecule Microscopy

14:50 16:20 Foyer (Hall 1): Poster Area

Marketing Session: GE Healthcare

16:00 16:15 Lecture Room 2 (Dortoir)

Marketing Session: QuantaCell

16:15 16:20 Lecture Room 2 (Dortoir)

Minisymposium: Microscopy in BioPharma

Session Chair: Sripad Ram

16:20 18:00 Lecture Room 1 (NEF)

Volumetric imaging of whole-tumors reveal cancer malignancy (# 164)

Per Uhlen
Karolinska Institutet, Stockholm, SE

16:20 16:40

Combining optical imaging of cleared tissue with mathematical modelling and in vivo imaging to predict drug delivery and therapeutic response (# 170)

Simon Walker-Samuel, Paul Sweeney, Angela d'Esposito, Rebecca Shipley
University College London, London, GB

16:40 17:00

Analyzing development, function and pathofunction of the vascular systems using light sheet microscopy (# 172)

Friedemann Kiefer
European Institute for Mol. Imaging (EIMI), Münster, DE

17:00 17:20

Fast nearly isotropic imaging of large samples like human tumors with ultramicroscopy

Hans-Ulrich Dodt, Saiedeh Saghafi, Klaus Becker, Christian Hahn, Marko Pende, Inna Sabdyusheva, Massih Foroughpour
TU Vienna, Vienna, AT

17:20 17:40

Deep learning based detection of cells in 3D Light sheet fluorescence microscopy (# 104)

Ali Ahmad, Pejman Rasti, Carole Frindel, David Sarrut, David Rousseau
Laboratoire LARIS, Université d'Angers, ANGERS, FR

17:20 17:40

Microscopy as a tool in the development of antibody-based therapeutics

E. Sally Ward
University of Southampton / Texas A&M Health Science Center, College Station, US

17:40 18:00

Session: Data Analysis Methods Development for Single Molecule Microscopy

Session Chair: Yoav Shechtman

16:20 18:05 Lecture Room 2 (Dortoir)

1 nanometer precision by bayesian grouping of localizations (# 136)

Mohamadreza Fazel, Bernd Rieger, Ralf Jungmann, Keith A Lidke
University of New Mexico, Albuquerque, US

16:20 16:35

4Pi single molecule localization with an experimental PSF model that achieves theoretical minimal uncertainty (# 55)

Yiming Li, Jonas Ries
European Molecular Biology Laboratory, Heidelberg, DE

16:35 16:50

Simultaneous detection of 3D orientation and 3D spatial localization of single emitters for super resolution structural imaging (# 155)

Miguel A Alonso
Institut Fresnel, Marseille, FR

16:50 17:05

Photon count estimation in single-molecule imaging (# 122)

Rasmus Østergaard Thorsen, Bernd Rieger, Sjoerd Stallinga, Christiaan Hulleman
TUDelft, Rotterdam, NL

17:05 17:20

Polygon-based colocalization analysis for multicolor single-molecule localization microscopy data (# 46)

Florian Levet, Jean-Baptiste Sibarita
Interdisciplinary Institute for NeuroScience, Bordeaux, FR

17:20 17:35

Preprocessing structured background signals to improve super-resolution fluorescence images (# 14)

Siewert Hugelier, Tomas Lukes, Peter Dedecker, Paul Eilers, Cyril Ruckebusch
KU Leuven, Heverlee, BE

17:35 17:50

An automated bayesian pipeline for rapid analysis of single-molecule binding data (# 33)

Carlas Sierd Smith, Karina Jouravleva, Maximiliaan Huisman, Samson M. Jolly, Phillip D. Zamore, David Grunwald
University of Massachusetts Medical School, Worcester, US

17:50 18:05

Dinner Break

18:30 20:30 (on own)

QBI Society Meeting

20:30 22:00 Small Assembly Room
Start End Location

Registration Desk Opens

08:00 18:00 Foyer (Hall 1): Registration Area

Lecture (Structured Illumination theme)

Session Chair: Raimund Ober

08:30 09:20 Lecture Room 1 (NEF)

Structured Illumination, past and present development

Rainer Heintzmann
Institute of Physical Chemistry, , Germany

08:30 09:20

Lecture (Optics theme)

Session Chair: Jörg Enderlein

09:20 09:40 Lecture Room 1 (NEF)

Measuring the phase and intensity of the light: from quantitative label-free imaging to fluorescence 3D super-resolution deep in tissues (# 161)

Pierre Bon
CNRS - Univ. Bordeaux - IOGS, Bordeaux (Talence), FR

09:20 09:40

Tutorial (Spatial Statistics)

Session Chair: Jean-Christophe Olivo-Marin

09:40 10:10 Lecture Room 1 (NEF)

A tutorial in spatial statistics for microscopy data analysis. (# 148)

Edward Cohen
Imperial College London, London, GB

09:40 10:10

Coffee Break

10:10 10:40 Foyer (Hall 1)

Minisymposium: Structured illumination: a review of the state of the art

Session Chair: Rainer Heintzmann

10:40 12:10 Lecture Room 1 (NEF)

A signal processing view of Structured Illumination Microscopy

Jean-Christophe Olivo-Marin
Institut Pasteur - CNRS 3691, Paris, FR

10:40 11:00

Noise controlled image reconstruction for structured illumination microscopy (# 91)

Sjoerd Stallinga
Delft University of Technology, Delft, NL

11:00 11:15

Robust adaptive optics for structured illumination microscopy fluorescence imaging (# 127)

Mantas Žurauskas, Martin Booth
University of Oxford, Oxford, GB

11:15 11:30

High-speed, real-time reconstructed structured illumination microscopy of living cells (# 154)

Thomas Huser
University of Bielefeld, , Germany

11:30 11:50

Random Illumination Microscopy: using uncontrolled speckles to improve the resolution of fluorescence microscopy

Anne Sentenac
CNRS Institut Fresnel, , France

11:50 12:10

Session: Applications in Cell Biology and Biophysics II

Session Chair: Daniel Wüstner

10:40 12:10 Lecture Room 2 (Dortoir)

A detailed analysis of the mobility of synaptic proteins reveals principles of protein segregation in the synapse and in the axon (# 20)

Sofiia Reshetniak, Sven Truckenbrodt, Silvio Rizzoli
University Medical Center Goettingen, Goettingen, DE

10:40 10:55

Investigation of the cross-talk between desmosomes and tetraspanin-enriched microdomains (# 32)

Maryam Arab, Iqra Arif, Jeremy Pike, Natalie Poulter, Martyn Chidgey, Elena Odintsova
University of Birmingham, Edgbaston, Birmingham, GB

10:55 11:10

The TCR is randomly distributed in the plasma membrane of resting T cells (# 88)

Andreas M Arnold, Benedikt Rossboth, Gerhard J Schütz
TU Wien, WIEN, AT

11:10 11:25

Multimodal microscopy reveals stiffness-dependent nanoscale remodeling of different actin modules during cell protrusion (# 99)

Alessandra Cambi
Radboud UMC, RIMLS, Nijmegen, NL

11:25 11:40

Functional insights into the intrinsically disordered protein α-synuclein (# 153)

Amin Fakhree, Christian Blum, Mireille Claessens
University of Twente, Enschede, NL

11:40 11:55

Three-dimensional single molecule imaging, with cellular context, of an engineered FcRn antagonist using remote focusing multifocal plane microscopy (# 169)

Sreevidhya Ramakrishnan, Sungyong You, Jerry Chao, Anish V Abraham, E. Sally Ward, Raimund J Ober
Texas A&M University, , USA

11:55 12:10

Lunch (provided)

12:10 13:30 Foyer (Hall 1): Food Area

Session: Structured Illumination

Session Chair: Sjoerd Stallinga

13:30 14:30 Lecture Room 1 (NEF)

Structured illumination for single molecule localization microscopy at depth (# 84)

Pierre Jouchet, Clement Cabriel, Nicolas Bourg, Marion Bardou, Guillaume Dupuis, Christian Poüs, Emmanuel Fort, Sandrine Leveque-Fort
CNRS, Orsay Cedex, FR

13:30 13:45

Super-resolved live imaging for a wide range of biological applications using Random Illumination Microscopy (RIM) (# 121)

Simon Labouesse, Emmanuel Martin, Renaud Poincloux, Sylvain Cantaloube, Tong Li, Christian Rouvière, Magali Suzanne, Nathalie Campo, Sophie Allard, Mathieu Pinot, Marc Allain, Jérome Idier, Anne Sentenac, Thomas Mangeat
CBI, Toulouse, FR

13:45 14:00

Novel method for structured illumination retinal imaging (# 124)

Yann Lai-Tim, Laurent Mugnier, Francois Orieux, Roberto Baena-Galle, Serge Meimon
ONERA, Chatillon Cedex, FR

14:00 14:15

Structured illumination - localization microscopy (# 130)

Stefan Wieser
ICFO - The Institute of Photonic Sciences, Castelldefels, ES

14:15 14:30

Session: Machine Learning in High Throughput Imaging

Session Chair: Patrick Bouthemy

14:30 15:15 Lecture Room 1 (NEF)

Use of deep learning in high-throughput flow imaging microscopy applications

Christopher P Calderon
University of Colorado, Denver, US

14:30 14:45

Advanced imaging flow cytometry (# 36)

Andreas Kleiber, Thomas Henkel
Leibniz Institute of Photonic Technology, Jena, DE

14:45 15:00

High and deep imaging flow cytometry: a potential diagnostic tool for hematological disorders (# 159)

Anne E Carpenter, Minh Doan
Broad Institute of MIT and Harvard, Cambridge, US

15:00 15:15

Session: Spatial Statistics

Session Chair: Edward Cohen

13:30 14:15 Lecture Room 2 (Dortoir)

Modelling the spatial distribution of the type 6 secretion system in Pseudonomas aeruginosa (# 53)

Scott Ward, Edward Cohen, Niall Adams
Imperial College, , United Kingdom

13:30 13:45

Mapping and comparing spatial distributions in biological imaging (# 64)

Jasmine Burguet, Philippe Andrey
INRA, Versailles, FR

13:45 14:00

Cluster analysis of the cell membrane (# 78)

Jerome Boulanger, Leila A Muresan
MRC-LMB, Cambridge, US

14:00 14:15

Session: Single Molecule Counting and Cluster Analysis

Session Chair: Keith A Lidke

14:15 15:15 Lecture Room 2 (Dortoir)

In vitro verification of a molecular counting technique based on fluorophore blinking statistics using DNA Origami (# 17)

Daniel Felipe Nino, Daniel Djayakarsana, Nafiseh Rafiei, Anton Zilman, Josh Milstein
University of Toronto, Mississauga, CA

14:15 14:30

Measuring ligand surface density on various substrates using fluorescence fluctuation microscopy (# 52)

Dwiria Wahyuni, Martial Balland, Olivier Destaing, Irène Wang, Antoine Delon
Université Grenoble Alpes, Grenoble, FR

14:30 14:45

Overcoming blinking artifacts in nanocluster detection with two-color storm (# 71)

Magdalena Schneider, Andreas Arnold, Florian Baumgart, Gerhard J Schütz
Vienna University of Technology, Vienna, AT

14:45 15:00

Quantifying protein oligomerization in living cells: a systematic comparison of fluorescent proteins and application to developmental cell-cell fusion (# 129)

Valentin Dunsing, Madlen Luckner, Boris Zühlke, Roberto Petazzi, Andreas Herrmann, Salvatore Chiantia
University of Potsdam, Berlin, DE

15:00 15:15

Session: Applications in Cell Biology and Biophysics

Session Chair: Alessandra Cambi

13:30 14:15 Lecture Room 3 (Horizons)

Micro-fluctuations of the length of the mitotic spindle reveal its mechanics and its dynamics during cell division (# 56)

Benjamin Mercat, Xavier Pinson, Yann Le Cunff, Jonathan Fouchard, Hadrien Mary, Sylvain Pastezeur, Yannick Gachet, Sylvie Tournier, Hélène Bouvrais, Jacques Pécréaux
IGDR, Rennes, FR

13:30 13:45

3D-EM-ISH – a novel tool to visualize specific chromatin regions (# 74)

Blazej H Ruszczycki
Polish Academy of Sciences, Warszawa, PL

13:45 14:00

Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis (# 103)

Julien Moukhtar, Elise Laruelle, Alain Trubuil, Katia Blecram, David Legland, Zhor Khadir, Jean-Christophe Palauqui, Philippe Andrey
INRA, Versailles, FR

14:00 14:15

Session: Software

Session Chair: Mark Bates

14:15 15:15 Lecture Room 3 (Horizons)

Combining annotation of movies and learning for fate prediction from early embryo development observation (# 51)

Alain Trubuil, Alline Reis, Véronique Duranthon, Brigitte Le Guienne, Nathalie Le Brusq, Soundouss Messoudi, Guillaume Brocart
INRA, , FR

14:15 14:30

u-track 3D: A tracking framework to quantify, observe and contextualize intracellular dynamics in three dimensions. (# 77)

Philippe Roudot, Wesley R. Legant, Kevin Dean, Ana David, Daniel Gerlich, Reto Fiolka, Eric Betzig, Gaudenz Danuser
UT Southwestern Medical Center, , USA

14:30 14:45

PartSeg - GUI for image processing algorithm in Python (# 89)

Grzegorz Bokota, Nirmal Das, Adriana Magalska, Subhadip Basu, Jacek Sroka, Dariusz Plewczynski
University of Warsaw, Warszawa, PL

14:45 15:00

A human-in-the-loop approach to image analysis (# 144)

Mohamed El Beheiry, Sebastien Doutreligne, Fabien Reyal, Jean-Baptiste Masson
Institut Curie, , france

15:00 15:15

Coffee Break

15:15 16:45 Foyer (Hall 1)

Poster Session: Tracking

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Applications in Cell Biology and Biophysics

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Spatial Statistics

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Single Molecule Counting and Cluster Analysis

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Image Analysis Methods Development

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Digital Pathology

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Software

15:15 16:45 Foyer (Hall 1): Poster Area

Poster Session: Structured Illumination

15:15 16:45 Foyer (Hall 1): Poster Area

Sponsor Session: New R&D microscopy advances in France-BioImaging by Jean Salamero

16:20 16:35 Lecture Room 1 (NEF)

GdR Imabio - Complex diffusion analysis challenge by Cyril Favard

16:35 16:40 Lecture Room 1 (NEF)

Session: Image Analysis Methods Development

Session Chair: Keith A Lidke

16:45 18:00 Lecture Room 1 (NEF)

How accurately two or more fluorophores can be spectrally resolved in a fluorescence microscope? (# 16)

Sripad Ram
Pfizer, Inc., , United States

16:45 17:00

Object detection networks for localization and classification of cells in fluorescence microscopy acquisition and analysis. (# 10)

Dominic Waithe
University of Oxford, Oxford, GB

17:00 17:15

Automatic registration for multidimensional correlative microscopies with error assessment and detections of deformations (# 101)

Perrine Paul-Gilloteaux
CNRS, Nantes, FR

17:15 17:30

Membrane curvature estimation method for cryo-electron tomography (# 118)

Maria Kalemanov, Javier F. Collado, Wolfgang Baumeister, Rubén Fernández-Busnadiego, Antonio Martínez-Sánchez
Max Planck Institute of Biochemistry, Martinsried, DE

17:30 17:45

Accordion-like collagen fibrils suggested by P-SHG image modeling : implication in liver fibrosis (# 142)

Denis Rouede, Emmanuel Schaub, Jean-Jacques Bellanger, Frederic Ezan, François Tiaho
University of Rennes 1, Rennes - France, FR

17:45 18:00

Session: Tracking

Session Chair: Patrick Bouthemy

16:45 18:00 Lecture Room 2 (Dortoir)

Local Maximum Likelihood estimation for time-varying Single Particle Tracking models (# 58)

Boris I Godoy, Nicholas Vickers, Sean Andersson
Boston University, Boston, US

16:45 17:00

3D motion estimation in 3D light microscopy image sequences: application to cell migration (# 43)

Sandeep Manandhar, Patrick Bouthemy, Philippe Roudot, Charles Kervrann
Inria, Rennes, FR

17:00 17:15

Non-equilibrium forces govern anomalous dynamics of subcellular domains in mammalian cells (# 68)

Lorenz Stadler, Konstantin Speckner, Matthias Weiss
University of Bayreuth, Bayreuth, DE

17:15 17:30

The topography of biological membranes artefactually creates the appearance of anomalous diffusion: a remedy (# 79)

Jeremy Adler, Ingela Parmryd, Robin Strand, Ida Sintorn
Uppsala University, Uppsala, SE

17:30 17:45

Fisher information matrix for molecules with stochastic trajectories (# 192)

Milad Rafiee Vahid, Bernard Hanzon, Raimund J Ober
Texas A&M University, College Station, US

17:45 18:00

Session: Digital Pathology

Session Chair: Sripad Ram

16:45 18:00 Lecture Room 3 (Horizons)

3D fluorescence whole slide imaging using confocal multi-line scanning (# 93)

Leon van der Graaff, Sjoerd Stallinga
Delft University of Technology, Delft, NL

16:45 17:00

Medical image analysis: Brain tumor grade classification (# 97)

Kawtar EL Karfi, Azeddine AIbrahimi
Medical and Pharmacy School, Mohammed V University, Rabat, Morocco, Temara, MA

17:00 17:15

Robust discrimination of antigen stain in histopathology (# 133)

Laura Nicolas-Saenz, Paula Martin-Gonzalez, Patricia Garoz, Felipe Calvo, Sara Guerrero-Apizua, Arrate Muñoz-Barrutia
universidad carlos iii, madrid, ES

17:15 17:30

QuPath – a tool for quality assurance, enhanced user training, and improved reproducibility of image analysis in histopathology research (# 137)

Zbigniew Mikulski, Katarzyna Dobaczewska, Angela Denn, Sara A McArdle
La Jolla Institute for Immunology, La Jolla, US

17:30 17:45

Segmenting 3D vascular networks with deep learning (# 176)

Natalie Holroyd, Claire Walsh, Monica Sidarous, Eoin Finnerty, Rebecca Shipley, Simon Walker-Samuel
University College London, London, GB

17:45 18:00

Conference Closing

18:10 18:30 Lecture Room 1 (NEF)

Poster Award Announcement - Sponsored by Institut de Recherches Servier

18:30 18:45 Lecture Room 1 (NEF)

Closing Gala Dinner Reception

19:00 23:00 La French Tech - Le Pool (Le Mabilay, 2 rue de la Mabilais, Rennes)

9 Jan (Wed)

A dynamic reconstruction of the endocytic machinery in yeast from static superresolution images ( # 131 , Board: 41 )

Yu-Le Wu, Philipp Hoess, Markus Mund, Joran Deschamps, Jonas Ries
European Molecular Biology Laboratory, Heidelberg, DE

Adaptive Holographic Region of Interest Illumination with Oblique Angles for use in Single Molecule Localization Microscopy ( # 216 , Board: 47 )

Alexander Jügler, Jan Becker, Patrick Then, Ronny Förster, Rainer Heintzmann
Leibniz-Institute of Photonic Technology, Jena, DE

Biological Deep Thermal Imaging with Fluorescence Lifetime of Rare-Earth-Based Ceramics Particles that Emit Near-Infrared Light in the Second Biological Window ( # 223 , Board: 54 )

Takumi Chihara, Masakazu Umezawa, Keiji Miyata, Shota Sekiyama, Naoki Hosokawa, Kyohei Okubo, Masao Kamimura, Kohei Soga
Tokyo University of Science, Katsushika, JP

Correlative STED and SMLM, without demons ( # 232 , Board: 66 )

Kirti Prakash
University of Cambridge, Cambridge, GB

Design of an "orthogonality-breaking" polarimetric confocal microscope to study intracellular architecture dynamics ( # 128 , Board: 5 )

Stephanie Dutertre, Mehdi Alouini, Julien Fade, Emilie Gillier, Cyril Hamel, Sébastien Huet, Gilles Le Marchand, Rebecca Smith, Paulami Ray, Marc Tramier
Univ Rennes, RENNES, FR

Improved single molecule localization from dual-objective microscopes with ZOLA-3D ( # 206 , Board: 1 )

benoit lelandais, MICKAEL LELEK, christophe Zimmer
institut pasteur, paris, FR

Intracellular dry-mass density measurements of bacteria using quantitative phase microscopy ( # 76 , Board: 25 )

Enno Oldewurtel, Sven van Teeffelen
Institut Pasteur, Paris, FR

Label-free refractometry and pathogen detection by super-critical angle fluorescence ( # 196 , Board: 14 )

Boris Ferdman, Lucien Weiss, Onit Alalouf, Yonathan Haimovich, Yoav Shechtman
Technion – Israel Institute of Technology, Adi, IL

Mapping fluid and single-cell dynamics in a controlled thermal landscape ( # 87 , Board: 36 )

Jaime Ortega Arroyo, Matz Liebel, Bernard Ciraulo, Stefan Wieser, Niek van Hulst, Romain Quidant
ICFO - The Institute of Photonic Sciences, Casteldefels, ES

Nanostructured substrates for super-resolution imaging ( # 212 , Board: 58 )

Maia Brunstein, Anne Talneau, Minh-Chau Nguyen, Pacal Berto, Anne-Laure Fehrembach, Anne Sentenac, Martin Oheim
Université Paris Descartes, Paris, FR

PRACTICAL IMPLEMENTATION OF THE OFF-AXIS HOLOGRAPHIC MICROSCOPE ( # 235 , Board: 38 )

Radim Kolar, Vratislav Cmiel, Larisa Baiazitova, Ivo Provaznik
Brno university of technology, Brno, CZ

Probing cells dynamics with quantitative Dynamic Full-Field OCT ( # 19 , Board: 62 )

Kassandra Groux, Jules Scholler, Kate Grieve, Claude Boccara
ESPCI, Paris, FR

Quantitative phase imaging of adherent mammalian cells: a comparison of three different techniques ( # 63 , Board: 19 )

Cédric Allier, Julien Savatier, Serge Monneret, Yves Usson, Ondrej Mandula, Lionel Hervé, Pierre Blandin, Sophie Morales
CEA-LETI, Grenoble, FR

REFRACTIVE INDEX MATCHING FOR IN VIVO LIGHT-SHEET MICROSCOPY ( # 242 , Board: 72 )

Dimitri Kromm
EMBL, Heidelberg, DE

RSMLM: An R-package for pointillist based analysis of single molecule localization microscopy data ( # 209 , Board: 23 )

Jeremy Pike, Iain B Styles
University of Birmingham, , United Kingdom

Single molecule nucleocytoplasmic transport dynamics in live cells ( # 117 , Board: 9 )

Seoungjun Lee
King’s College London, London, GB

Structured illumination in laser scanning microscopy for super-resolved multiphoton imaging: theory and simulations of scanning SIM ( # 215 , Board: 28 )

Eli Slenders, Marcel Ameloot, M vandeVen
Hasselt University, Hasselt, BE

Temperature Sensing of Deep Abdominal Region in Mice by Using Over-1000 nm Near-Infrared Luminescence of Rare-Earth-Doped NaYF4 Nanothermometer ( # 224 , Board: 70 )

Shota Sekiyama, Masakazu Umezawa, Shuhei Kuraoka, Takuji Ube, Masao Kamimura, Kohei Soga
Tokyo University of Science, Katsushika, JP

The problem of orientation-induced mislocalizations of single emitters in cryo‐fluorescence microscopy ( # 160 , Board: 32 )

Oleksii Nevskyi, Jörg Enderlein, Ingo Gregor
Georg August University Goettingen, Goettingen, DE

Towards self-driving super-resolution microscopes for live-cell imaging ( # 240 , Board: 45 )

Dora Mahecic, Suliana Manley
EPFL, Lausanne, CH

10 Jan (Thu)

Automated brain region recognition in fluorescent tissue slices using deep learning ( # 237 , Board: 68 )

Michaël Barbier, Hervé Maurin, Emiel Holvoet, Rony Nuydens, Peter Larsen, Peter Horvath, Winnok De Vos
University of Antwerp, Antwerpen, BE

CNN based semi-supervised FIB-SEM image segmentation via propagation of learned information from a small subset of a single image stack ( # 86 , Board: 30 )

Kevin G Loftis, Kevin Stoltz, Guillaume Thibault, Jessica L Riesterer, Young Hwan Chang, Joe Gray
Oregon Health & Science University, Portland, US

Calibrating a microscope by learning its diversity ( # 21 , Board: 64 )

Valentin Debarnot, Pierre Weiss, Thomas Mangeat, Paul Escande
ITAV, CNRS, Toulouse, FR

Deep learning for dense 3D single molecule localization microscopy ( # 203 , Board: 49 )

Elias E Nehme, Daniel Freedman, Tomer Michaeli, Yoav Shechtman
Technion - Israel Institute of Technology, Haifa, IL

Deep learning for quantitative bi-exponential fluorescence lifetime imaging ( # 12 , Board: 7 )

Jason T. Smith, Ruoyang Yao, Sez-Jade Chen, Nattawut Sinsuebphon, Alena Rudkouskaya, Margarida Barroso, Pingkun Yan, Xavier Intes
Rensselaer Polytechnic Institute, Troy, US

Establishing the theoretical density/SNR limits for SMLM analysis leads to the design of UNLOC a parameter-free and fast computing ImageJ plugin ( # 107 , Board: 12 )

Sébastien Mailfert, Nicolas Bertaux, Didier Marguet
Centre d'Immunologie de Marseille Luminy, Marseille cedex 09, FR

Experimentally-generated ground truth for tracking lymphocyte populations in image-based immunotherapy screens ( # 102 , Board: 34 )

Joseph Boyd, Zelia Gouveia, Franck Perez, Thomas Edgar Walter
MINES Paristech, Paris, FR

Image based modeling of leaf development ( # 37 , Board: 43 )

Mohamed Oughou, Patrick Laufs, Eric Cunha, Eric Biot, Nicolas Arnaud, Philippe Andrey, Jasmine Burguet
INRA, Nanterre, FR

Image profiling exposes a pharmacological window for modifiers of neuronal network connectivity ( # 230 , Board: 3 )

Marlies Verschuuren, Winnok De Vos
University of Antwerp, Antwerp, BE

Machine Learning Pipeline for Automated Classification and Novelty Detection in High Dimensional Images of Tumor Microenvironments ( # 241 , Board: 71 )

Andre Gosselink, Elvira Criado-Moronati, Stefan Borbe, Ali Kinkhabwala, Jutta Kollet
Miltenyi Biotec GmbH, Bergisch Gladbach, DE

PyMOL Molecular Graphics System for Immunoglobulin Cross-Reactivity Analysis ( # 233 , Board: 56 )

Nasreddine SAIDI
Institut Pasteur Tunis, Tunis, TN

Quantifying molecular confinement using sSTED-FCS: The case of lipid trapping during HIV-1 assembly in living T cells ( # 213 , Board: 26 )

Cyril Favard, Jakub Chojnacki, Christian Eggeling, Delphine Muriaux
CNRS, Montpellier, FR

Quantitative evaluation of a next generation scientific CMOS (sCMOS) camera for high fidelity imaging ( # 114 , Board: 21 )

Shigeo Watanabe, Takafumi Higuchi, Teruo Takahashi, Katsuhide Ito
Hamamatsu Photonics K.K., Hamamatsu-city, JP

Scalable analysis of ultra-terabyte brain images with deep learning ( # 73 , Board: 17 )

Giacomo Mazzamuto, Francesco Orsini, Matteo Roffilli, Paolo Frasconi, Francesco Pavone, Ludovico Silvestri
National Institute of Optics, National Research Council, Sesto Fiorentino, IT

Segmentation of adjacent cells in a C. elegans embryo using a multi-compartment active contour ( # 40 , Board: 60 )

Anaïs Badoual
Ecole Polytechnique Fédérale de Lausanne, Prilly, CH

Semi-quantitative analysis of the trace metallic elements with synchrotron radiation X-ray fluorescence analysis and the experimental concentration standard specimens ( # 22 , Board: 52 )

Motohiro Uo, Takahiro Wada
The University of Tokyo, Bunkyo-ku, JP

11 Jan (Fri)

3D stochastic process simulation for better interpretation of molecular dynamics related to cell wall biogenesis observed with TIRF microscopy ( # 72 , Board: 6 )

Charles Kervrann, Alain Trubuil, Cyrille Billaudeau, Rut Carballido-Lopez, Yunjiao LU
INRA, Jouy-en-Josas, FR

3D tracking of endocytic events using lattice light sheet microscopy ( # 92 , Board: 8 )

Cesar Augusto VALADES CRUZ, Alison Forrester, Christian Wunder, Charles Kervrann, Jean SALAMERO, Ludger Johannes
Institut Curie, Paris, FR

A mechano-imaging method to quantify intracellular biophysics ( # 140 , Board: 48 )

Aleix Boquet-Pujadas, Elisabeth Labruyere, Jean-Christophe Olivo-Marin
Institut Pasteur, Paris, FR

A pyramidal PDE-constrained approach to quasi-static optical elastography ( # 141 , Board: 51 )

Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin
Institut Pasteur, PARIS, FR

Adaptive optics flood-illumination ophthalmoscope with structured illumination capabilities ( # 123 , Board: 16 )

Yann Lai-Tim, Laurent Mugnier, Elena Gofas-Salas, Pedro Mece, Cyril Petit, Francois Orieux, Michel Paques, Serge Meimon
ONERA, Chatillon Cedex, FR

Analysing and quantifying intracellular particles movements in 3D LLSM data ( # 109 , Board: 44 )

Antoine Salomon, Vincent Briane, Myriam Vimond, Cesar Augusto VALADES CRUZ, Charles Kervrann
Inria Rennes, Rennes, FR

Automated inhibitor screening of aurka kinase activity based on a FRET biosensor ( # 13 , Board: 13 )

Florian Sizaire, Gilles Le Marchand, Giulia Bertolin, Sandrine Ruchaud, Claude Prigent, Otmane Bouchareb, Olivier Chanteux, Marc Tramier
Institut de Génétique et de Développement de Rennes, Rennes, FR

Automatic detection of tumoral tissue in hepatocellular carcinoma digital slides using deep convolutional networks ( # 65 , Board: 53 )

Qinghe Zeng, Nicolas Lomenie, Julien Calderaro, Christophe Klein
INSERM U1138 - Centre de Recherche des Cordeliers, Nantes, FR

Biophysical characterization of the interactions between Influenza A virus matrix protein M1 and host plasma membrane ( # 112 , Board: 24 )

Salvatore Chiantia
University of Potsdam, Potsdam / Golm, DE

Brownian motion using a piezo actuated microscope stage ( # 26 , Board: 4 )

Nicholas Vickers, Sean Andersson
Boston University, Quincy, US

Challenges in structured illumination microscopy ( # 30 , Board: 69 )

Verena Richter, Mathis Piper, Michael Wagner, Herbert Schneckenburger
Aalen University, Aalen, DE

Complex diffusion analysis challenge ( # 208 , Board: 11 )

Maxime Woringer, Hugues Berry, Dominique Bourgeois, Cyril Favard, Ignacio Izeddin
Institut Pasteur, , France

Computational pipeline for registration of 3D images of fixed specimens to 4D time-lapse recordings of developing biological systems ( # 138 , Board: 61 )

Manan Lalit, Mette Handberg-Thorsager, Florian Jug, Pavel Tomancak
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, DE

Determining biophysical parameters in living cells with Icy ( # 198 , Board: 10 )

Maria Manich, Aleix Boquet-Pujadas, Nancy Guillén, Jean-Christophe Olivo-Marin
Institut Pasteur, Paris, FR

High-resolution 2d+t imaging of calcium signaling microdomains in cardiac myocytes ( # 132 , Board: 27 )

Mouna Abdesselem
KU Leuven, Leuven, BE

Icy: A powerful and user friendly platform for Bio image analysis. ( # 211 , Board: 63 )

Fabrice de Chaumont, Stephane Dallongeville, Jean-Christophe Olivo-Marin
Institut Pasteur, Paris, FR

Imaging release of siRNAs from vesicles damaged by membrane-disrupting drugs ( # 239 , Board: 33 )

Hampus Du Rietz, Hampus Hedlund, Anders Wittrup
Lund University, Lund, SE

Large scale feature extraction and image classification for high content screening microscopy ( # 113 , Board: 57 )

Laurent Thomas, Gunjan Pandey, Jens H.Westhoff, Franz Schaefer, Jochen Gehrig
Uniklinikum Heidelberg and Acquifer, Heidelberg, DE

Measuring ligand 2D/surface density on various substrates using fluorescence fluctuation microscopy ( # 49 , Board: 35 )

Dwiria Wahyuni, Irène Wang, Antoine Delon
Université Grenoble Alpes, , France

Mechanistic investigation of mEos4b blinking suggests a strategy to reduce track interruptions in sptPALM ( # 25 , Board: 2 )

Daniel Thédié, Dominique Bourgeois, Elke De Zitter, Peter Dedecker, Virgile Adam
IBS (Institut de Biologie Structurale), Grenoble, FR

Mesoscopic organisation of polarity proteins in epithelial cells ( # 210 , Board: 29 )

Edo Dzafic, Leila A Muresan
Cambridge University, Cambridge, GB

Near real time analysis of stress fiber formation in stem cells ( # 31 , Board: 55 )

Lara Hauke, Benjamin Eltzner, Carina Wollnik, Stephan Huckemann, Florian Rehfeldt
Georg August Universität Göttingen, Göttingen, DE

Protein copy number estimation in biological samples with high fluorescent background ( # 75 , Board: 40 )

Johan Hummert, Klaus Yserentant, Wioleta Chmielewicz, Dirk-Peter Herten
Heidelberg University, , Germany

Protein counting in T-cell receptor microclusters ( # 139 , Board: 42 )

Wioleta Chmielewicz, Dirk-Peter Herten, Oliver T. Fackler
Heidelberg University, Heidelberg, DE

Protein counting in localisation microscopy ( # 62 , Board: 37 )

Daniel Varga, Miklós Erdélyi
University of Szeged, Szeged, HU

Quantitative 3D geometry for large scale connectomics data ( # 126 , Board: 46 )

Minh-Son Phan, Katherine Matho, Lamiae Abdeladim, Jean Livet, Emmanuel Beaurepaire, Anatole Chessel
Ecole Polytechnique Paris-Saclay, Palaiseau, FR

SIMTOOLBOX 2.0: AN OPEN-SOURCE TOOLBOX FOR STRUCTURED ILLUMINATION MICROSCOPY ( # 220 , Board: 67 )

Jakub Pospíšil, Tomáš Lukeš, Pavel Křížek, Martin Ovesný, Vojtěch Terš, Karel Fliegel, Miloš Klíma, Guy M. Hagen
UNI-Bielefeld, Bielefeld, DE

Simulator of benchmarking image datasets for time-lapse lightsheet microscopy ( # 134 , Board: 59 )

Vladimír Ulman
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, DE

Software framework for Advanced Single Molecule Data Analysis ( # 218 , Board: 65 )

Anish V Abraham, Dukwhan David Kim, Jerry Chao, E. Sally Ward, Raimund J Ober
Texas A&M University, College Station, US

Spatial analysis of protein or lipid distributions on the surface of spherical beads ( # 135 , Board: 50 )

Anastasia Solomatina, Alice Cezanne, Marino Zerial, Ivo F. Sbalzarini
MPI-CBG, Dresden, Germany, Dresden, DE

Studying oscillatory behavior in asymmetric division of Caenorhabditis elegans embryo with fluorescence miscroscopy ( # 24 , Board: 15 )

Anca Caranfil, Charles Kervrann, Yann Le Cunff, Jacques Pécréaux
INRIA Rennes - Bretagne Atlantique, France, RENNES, FR

Time resolve intensity photo bleaching (TRIP) as a tool for quantify bound /unbound fraction of lamin A protein in vivo. ( # 229 , Board: 31 )

‪Eugene Brozgol‬‏, Irena Bronshtein, Iatamar Kantor, Yuval Garini
Bar Ilan University, גבעת שמואל, IL

Ultrastructure of endo-lysosomes during cholesterol efflux studied by combined fluorescence and cryo-soft X-ray tomography ( # 35 , Board: 18 )

Alice Dupont Juhl, Frederik W. Lund, Maria Louise Vestbjerg Jensen, Maria Szomek, Gitte Krogh Nielsen, Christian W. Heegaard, Peter Guttmann, Stephan Werner, James McNally, Gerd Schneider, Sergey Kapishnikov, Daniel Wüstner
The University of Southern Denmark, Årslev, DK

Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development ( # 60 , Board: 22 )

Thang Duong Quoc Le, Christine Girousse, David Legland, Anne-Laure Chateigner Boutin
INRA Angers-Nantes, Nantes, FR

Using time-lapse microscopy to unravel the stochastic nature of Listeria monocytogenes infection ( # 44 , Board: 20 )

Josephine C Moran, Andrew Berry, James Bagnall, Pawel Paszek, Ian Roberts
University of Manchester, Manchester, GB