QBI 2019 Conference Sessions
9 Jan - 11 Jan
Start | End | Location | |
---|---|---|---|
Registration: Workshops |
08:00 | 16:00 | Foyer (Hall 1) |
Workshop: Adaptive Optics |
08:30 | 10:45 | Lecture Room 2 (Dortoir) |
Coffee Break |
10:45 | 11:00 | Foyer (Hall 1) |
Workshop: Machine Learning |
11:00 | 12:30 | Lecture Room 2 (Dortoir) |
Machine learning workshop: an introduction to machine learning and a taste of advanced methods
Seth Flaxman
|
11:00 | 12:30 | |
Lunch Break |
12:30 | 13:30 | (on own) |
Workshop: Machine Learning continued |
13:30 | 16:45 | Lecture Room 2 (Dortoir) |
Machine learning workshop: an introduction to machine learning and a taste of advanced methods
Seth Flaxman
|
13:30 | 14:30 | |
Large-Scale Optimization for Machine Learning
Julien Mairal
|
14:30 | 15:45 | |
Introduction to deep learning (# 228)
Christophe Zimmer
|
15:45 | 16:45 | |
Coffee Break |
16:45 | 17:15 | Foyer (Hall 1) |
Workshop: 3D Super resolution Microscopy |
17:15 | 19:15 | Lecture Room 2 (Dortoir) |
Registration Desk Opens: Main Conference |
17:15 | 21:15 | Foyer (Hall 1): Registration Area |
Opening Reception |
18:15 | 20:30 | Foyer (Hall 1) |
Start | End | Location | |
---|---|---|---|
Registration Desk Opens |
08:00 | 20:30 | Foyer (Hall 1): Registration Area |
Opening Remarks |
08:15 | 08:30 | Lecture Room 1 (NEF) |
Lecture (Machine Learning theme) Session Chair: Charles Kervrann |
08:30 | 09:10 | Lecture Room 1 (NEF) |
Sparse modeling of data and deep learning
Michael Elad
|
08:30 | 09:10 | |
Lecture (Machine Learning theme) Session Chair: Charles Kervrann |
09:10 | 09:40 | Lecture Room 1 (NEF) |
Content-aware image restoration for light and electron microscopy
Florian Jug
|
09:10 | 09:40 | |
Lecture (Single Molecule Microscopy theme) Session Chair: Susan Cox |
09:40 | 10:10 | Lecture Room 1 (NEF) |
Fixation and sample processing issues for super-resolution microscopy (# 157)
Silvio Rizzoli
|
09:40 | 10:10 | |
Coffee Break |
10:10 | 10:40 | Foyer (Hall 1) |
Hamamatsu Photonics Workshop I |
10:40 | 17:00 | Les Horizons |
Minisymposium: Machine learning in bioimage analysis and microscopy Session Chair: Christopher P Calderon |
10:40 | 11:40 | Lecture Room 1 (NEF) |
Label-free Prediction of Subcellular Organization: Capturing Variation and Integrating Observations (# 236)
Chawin Ounkomol,
Sharmishtaa Seshamani,
Forrest Collman,
Mary (Molly) M Maleckar,
Gregory R Johnson
|
10:40 | 11:00 | |
Unraveling the Rules of Life a few photons at a time (# 166)
Steve Pressé
|
11:00 | 11:20 | |
Computational boosts to single molecule localization microscopy (# 207)
Christophe Zimmer
|
11:20 | 11:40 | |
Session: Single Molecule Microscopy Session Chair: Susan Cox |
11:40 | 12:25 | Lecture Room 1 (NEF) |
Data fusion for localization microscopy
Bernd Rieger
|
11:40 | 11:55 | |
Nuclear pores as universal reference standards for quantitative microscopy (# 145)
Jonas Ries
|
11:55 | 12:10 | |
Artefact free high density localisation microscopy analysis (# 66)
Richard John Marsh
|
12:10 | 12:25 | |
Session: Optical Methods Developments Session Chair: Sjoerd Stallinga |
10:40 | 11:55 | Lecture Room 2 (Dortoir) |
Super-resolution imaging of unlabeled living cells using superoscillatory polarization contrast (# 120)
Edward T F Rogers,
Shmma Quraishe,
Katrine Rogers,
Tracey Newman,
Peter Smith,
Nikolay Zheludev
|
10:40 | 10:55 | |
Single-shot fluorescence holography for 3D tracking in live cells (# 85)
Matz Liebel,
Jaime Ortega Arroyo,
Vanesa Sanz,
Johann Osmond,
Romain Quidant,
Niek van Hulst
|
10:55 | 11:10 | |
Simple and compact microscope for time-lapse phase and fluorescence imaging based on chromatic aberration (# 106)
Ondrej Mandula,
Cédric Allier,
Sophie Morales,
Jean-Philippe Kleman,
Francoise Lacroix,
Lionel Hervé
|
11:10 | 11:25 | |
Speed OPIOM (Out-of-Phase Imaging after Optical Modulation) for quantitative multiplexed fluorescence imaging against autofluorescence under ambient light (# 111)
Ruikang Zhang,
Raja CHOUKET,
Marie Aude Plamont,
Zsolt Kelemen,
Agathe Espagne,
Alison Tebo,
Arnaud Gautier,
Lionel Gissot,
Jean-Denis Faure,
Ludovic Jullien,
Vincent Croquette,
Thomas le Saux
|
11:25 | 11:40 | |
Methods and applications of quantitative dynamic full-field coherence tomography (# 191)
Jules Scholler,
Kassandra Groux,
Claude Boccara,
Kate Grieve
|
11:40 | 11:55 | |
Session: Biological Applications of Optical Developments Session Chair: Sjoerd Stallinga |
11:55 | 12:25 | Lecture Room 2 (Dortoir) |
LIESS-FCS: spatially resolved diffusion modes measured by STED nanoscopy (# 38)
Falk Schneider,
Dominic Waithe,
Erdinc Sezgin,
Christian Eggeling
|
11:55 | 12:10 | |
Adaptive optics allows 3D STED-FCS measurements in the cytoplasm of living cells (# 108)
Aurélien Barbotin,
Silvia Galiani,
Iztok Urbančič,
Christian Eggeling,
Martin Booth
|
12:10 | 12:25 | |
Lunch (provided) |
12:25 | 13:45 | Foyer (Hall 1): Food Area |
Pair Talk Session Chair: E. Sally Ward |
13:45 | 14:25 | Lecture Room 1 (NEF) |
Structure and dynamics of endosomes analyzed by imaging-based methods (# 181)
Marino Zerial
|
13:45 | 14:05 | |
Structure and dynamics of endosomes analyzed by imaging-based methods (# 188)
Yannis Kalaidzidis
|
14:05 | 14:25 | |
Lecture (Software development theme) Session Chair: Raimund J Ober |
14:25 | 14:55 | Lecture Room 1 (NEF) |
The ImageJ ecosystem: An open platform for biomedical image analysis.
Kevin W Eliceiri
|
14:25 | 14:55 | |
Lecture (Past chair lecture) Session Chair: Raimund J Ober |
14:55 | 15:15 | Lecture Room 1 (NEF) |
About the optimal optical transfer function of a microscope (# 27)
Jörg Enderlein
|
14:55 | 15:15 | |
Coffee Break |
15:15 | 16:45 | Foyer (Hall 1) |
Poster Session: Single Molecule Microscopy Methods Development |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Optical Methods Developments |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Applications of Single Molecule Microscopy |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Single Molecule Microscopy Experimental Approaches |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Biological Applications of Optical Developments |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Marketing Session: Oxford NanoImaging |
16:25 | 16:40 | Lecture Room 2 (Dortoir) |
Minisymposium: Software design for microscopy hardware control Session Chair: Raimund J Ober |
16:45 | 18:45 | Lecture Room 1 (NEF) |
Why to automate your microscope and how to control it (# 158)
Winfried Wiegraebe,
Mark Bates,
Francisco Balzarotti
|
16:45 | 18:45 | |
Session: Applications of Single Molecule Microscopy Session Chair: Diane Lidke |
16:45 | 17:30 | Lecture Room 2 (Dortoir) |
Unraveling molecular arrangement of synaptic proteins with multiple color super resolution microscopy ans statistical object distance analyse with icy soda (# 42)
Thibault Lagache,
Philippe Bun,
Stephane Dallongeville,
Alexandre Dufour,
Jean-Christophe Olivo-Marin,
Thierry Galli,
Lydia A Danglot
|
16:45 | 17:00 | |
Multiscale computational modelling of chromatin three-dimensional structure using iPALM microscopic high-resolution images (# 80)
Zofia Anna Parteka,
Dariusz Plewczyński
|
17:00 | 17:15 | |
A quantitative look at cellular oligonucleotide delivery (# 81)
Leontien van der Bent,
Natalia Feiner,
R. Alis Olea,
Johanna Berndt,
Derick Wansink,
Lorenzo Albertazzi,
Roland Brock
|
17:15 | 17:30 | |
Session: Single Molecule Microscopy Experimental Approaches Session Chair: Bernd Rieger |
17:30 | 18:30 | Lecture Room 2 (Dortoir) |
Imaging complex protein machines by high-throughput localization microscopy (# 34)
Joran Deschamps,
Markus Mund,
Jonas Ries
|
17:30 | 17:45 | |
Multi-color cryo-fluorescence microscopy (# 67)
Maximiliaan Huisman,
Farzin Farzam,
David Grunwald
|
17:45 | 18:00 | |
Wide depth reproducible multicolor bioimaging through a combination of 3D single molecule localization strategies (# 82)
Clement Cabriel,
Nicolas Bourg,
Pierre Jouchet,
Guillaume Dupuis,
Christophe Leterrier,
Aurélie Baron,
Boris Vauzeilles,
Emmanuel Fort,
Sandrine Leveque-Fort
|
18:00 | 18:15 | |
A tilted light sheet for single-molecule super-resolution imaging in thick cells (# 110)
Petar N Petrov,
Anna-Karin Gustavsson,
Yoav Shechtman,
Maurice Lee,
William E. Moerner
|
18:15 | 18:30 | |
QBI Student/Post-doc Chapter Inaugural Meeting |
18:45 | 19:30 | Location TBD |
Opening Reception and Poster Viewing |
18:45 | 22:15 | Foyer (Hall 1) |
Start | End | Location | |
---|---|---|---|
Registration Desk Opens |
08:00 | 18:30 | Foyer (Hall 1): Registration Area |
Lecture (Quantitative tools for subcellular trafficking) Session Chair: Daniel Wüstner |
08:30 | 09:20 | Lecture Room 1 (NEF) |
Using microscopy to dissect endolysosomal trafficking and function (# 214)
Frederick Maxfield
|
08:30 | 09:20 | |
Tutorial (Correlative imaging) Session Chair: Daniel Wüstner |
09:20 | 09:50 | Lecture Room 1 (NEF) |
Correlative light - electron microscopy: approaches, applications and outlook
Judith Klumperman
|
09:20 | 09:50 | |
Lecture (Imaging for BioPharma applications theme) Session Chair: Sripad Ram |
09:50 | 10:30 | Lecture Room 1 (NEF) |
Analyzing three-dimensional biological specimens observed with light sheet microscopy under near-natural conditions (# 167)
Ernst HK Stelzer
|
09:50 | 10:30 | |
Poster Award Lecture Session Chair: Susan Cox |
10:30 | 10:40 | Lecture Room 1 (NEF) |
Measuring the absolute degree of labeling for self-labeling protein tags (# 116)
Klaus Yserentant,
Felix Braun,
Siegfried Hänselmann,
Wioleta Chmielewicz,
Johan Hummert,
Florian Salopiata,
Dirk-Peter Herten
|
10:30 | 10:40 | |
Tribute to Maxime Dahan by Bassam Hajj (Institut Curie Paris) |
10:40 | 10:50 | Lecture Room 1 (NEF) |
Coffee Break |
10:50 | 11:15 | Foyer (Hall 1) |
Hamamatsu Photonics Workshop II |
11:15 | 17:00 | Les Horizons |
Minisymposium: Quantitative tools to define subcellular trafficking processes Session Chair: E. Sally Ward |
11:15 | 12:15 | Lecture Room 1 (NEF) |
Lectin-driven and glycosphingolipid-dependent construction of endocytic pits (# 162)
Ludger Johannes
|
11:15 | 11:35 | |
Quantitative visualization of SNARE complex formation in living cells (# 185)
Geert van den Bogaart
|
11:35 | 11:55 | |
Fluorescence studies of sterol transport between cellular membranes (# 221)
Daniel Wüstner
|
11:55 | 12:15 | |
Session: Machine Learning in Single Molecule Microscopy and Deconvolution Session Chair: Christophe Zimmer |
11:15 | 12:15 | Lecture Room 2 (Dortoir) |
Deep learning for dense and multicolor localization microscopy (# 15)
Elias Nehme,
Eran Hershko,
Lucien Weiss,
Tomer Michaeli,
Yoav Shechtman
|
11:15 | 11:30 | |
3D ConvNets improve macromolecule localization in 3D cellular cryo-electron tomograms (# 61)
Emmanuel Moebel,
Charles Kervrann
|
11:30 | 11:45 | |
Single molecule at the age of big data: probabilistic pipeline and unsupervised learning (# 143)
Francois Laurent,
Alexander Serov,
Christian Vestergaard,
Jean-Baptiste Masson
|
11:45 | 12:00 | |
Semi-blind spatially-variant deconvolution and focus estimation in optical microscopy by use of convolutional neural networks (# 50)
Adrian Shajkofci,
Michael Liebling
|
12:00 | 12:15 | |
Lunch (provided) |
12:10 | 13:30 | Foyer (Hall 1): Food Area |
Pair Talk Session Chair: Diane Lidke |
13:30 | 14:10 | Lecture Room 1 (NEF) |
Uncovering transients in single molecule motion: Application to cell surface proteins (# 163)
Anthony Vega,
Spencer Freeman,
Sergio Grinstein,
Khuloud Jaqaman
|
13:30 | 13:50 | |
Transmembrane pickets corral bystanders in the plasma membrane by tethering to the submembrane cytoskeleton (# 194)
Khuloud Jaqaman,
Sivakami Mylvaganam,
Anthony Vega,
Sergio Grinstein,
Spencer Freeman
|
13:50 | 14:10 | |
Session: Application of Image Analysis Approaches Session Chair: Jean-Christophe Olivo-Marin |
13:30 | 15:00 | Lecture Room 2 (Dortoir) |
High content cell classification and tracking improvement by morphology and quantitative phase feature combination (# 39)
Benoit Wattellier,
Sherazade Aknoun,
Manuel Yonnet,
Fabrice Valentino,
Djamel Brahmi,
Michel Barlaud,
Philippe Pognonec,
Thierry Pourcher
|
13:30 | 13:45 | |
Two dynamic behaviors of the microtubules at the cell cortex reveal the pulling and pushing forces that position the mitotic spindle in C. elegans embryos (# 47)
Hélène Bouvrais,
Danielle Fairbrass,
Laurent Chesneau,
Nina Soler,
Yann Le Cunff,
Thierry Pécot,
Charles Kervrann,
Jacques Pécréaux
|
13:45 | 14:00 | |
Investigating the spatio-temporal patterning of neural stem cell activation events (# 105)
Sebastien Herbert,
Nicolas Dray,
Laure Mancini,
Willy Supatto,
Jean-Yves Tinevez,
Jean-Baptiste Masson,
Laure Bally-Cuif
|
14:00 | 14:15 | |
Quantitative analysis of collagen microstructure in vitro and in vivo by means of multi-phasor analysis of second harmonic generation microscopy. (# 23)
Giuseppe Chirico,
laura D'Alfonso,
MAddalena Collini,
Margaux Bouzin,
Riccardo Scodellaro,
laura Sironi
|
14:15 | 14:30 | |
Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis (# 54)
Faïçal Selka,
Thomas Blein,
Jasmine Burguet,
Eric Biot,
Patrick Laufs,
Philippe Andrey
|
14:30 | 14:45 | |
Segmentation of 3D images of plant tissues at multiple scales using the level set method (# 115)
Annamaria Kiss,
Typhaine Moreau,
Vincent Mirabet,
Cerasela Iliana Calugaru,
Arezki Boudaoud,
Pradeep Das
|
14:45 | 15:00 | |
Session: Sample Methods Development Session Chair: Dirk-Peter Herten |
14:10 | 14:55 | Lecture Room 1 (NEF) |
DNA origami as a nanoscale platform for T-cell activation (# 28)
Joschka Peter Hellmeier,
Eva Sevcsik
|
14:10 | 14:25 | |
Characterisation of GFP and derivatives for super-resolution cryogenic single molecule localisation microscopy (# 100)
Amy N Moores,
Lin Wang,
Laura Zanetti-Domingues,
Benji Bateman,
Marisa Martin-Fernandez
|
14:25 | 14:40 | |
Novel tetrazine probes for fluorogenic protein labeling (# 125)
Felix Braun,
Philipp Werther,
Klaus Yserentant,
Achim Wieczorek,
Richard Wombacher,
Dirk-Peter Herten
|
14:40 | 14:55 | |
Coffee Break |
14:50 | 16:20 | Foyer (Hall 1) |
Poster Session: Applications in Biopharma |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Poster Session: Machine Learning |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Poster Session: Application of Image Analysis Approaches |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Poster Session: Sample Methods Developments |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Poster Session: Instrument Characterization |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Poster Session: Data Analysis Methods Development for Single Molecule Microscopy |
14:50 | 16:20 | Foyer (Hall 1): Poster Area |
Marketing Session: GE Healthcare |
16:00 | 16:15 | Lecture Room 2 (Dortoir) |
Marketing Session: QuantaCell |
16:15 | 16:20 | Lecture Room 2 (Dortoir) |
Minisymposium: Microscopy in BioPharma Session Chair: Sripad Ram |
16:20 | 18:00 | Lecture Room 1 (NEF) |
Volumetric imaging of whole-tumors reveal cancer malignancy (# 164)
Per Uhlen
|
16:20 | 16:40 | |
Combining optical imaging of cleared tissue with mathematical modelling and in vivo imaging to predict drug delivery and therapeutic response (# 170)
Simon Walker-Samuel,
Paul Sweeney,
Angela d'Esposito,
Rebecca Shipley
|
16:40 | 17:00 | |
Analyzing development, function and pathofunction of the vascular systems using light sheet microscopy (# 172)
Friedemann Kiefer
|
17:00 | 17:20 | |
Fast nearly isotropic imaging of large samples like human tumors with ultramicroscopy
Hans-Ulrich Dodt,
Saiedeh Saghafi,
Klaus Becker,
Christian Hahn,
Marko Pende,
Inna Sabdyusheva,
Massih Foroughpour
|
17:20 | 17:40 | |
Deep learning based detection of cells in 3D Light sheet fluorescence microscopy (# 104)
Ali Ahmad,
Pejman Rasti,
Carole Frindel,
David Sarrut,
David Rousseau
|
17:20 | 17:40 | |
Microscopy as a tool in the development of antibody-based therapeutics
E. Sally Ward
|
17:40 | 18:00 | |
Session: Data Analysis Methods Development for Single Molecule Microscopy Session Chair: Yoav Shechtman |
16:20 | 18:05 | Lecture Room 2 (Dortoir) |
1 nanometer precision by bayesian grouping of localizations (# 136)
Mohamadreza Fazel,
Bernd Rieger,
Ralf Jungmann,
Keith A Lidke
|
16:20 | 16:35 | |
4Pi single molecule localization with an experimental PSF model that achieves theoretical minimal uncertainty (# 55)
Yiming Li,
Jonas Ries
|
16:35 | 16:50 | |
Simultaneous detection of 3D orientation and 3D spatial localization of single emitters for super resolution structural imaging (# 155)
Miguel A Alonso
|
16:50 | 17:05 | |
Photon count estimation in single-molecule imaging (# 122)
Rasmus Østergaard Thorsen,
Bernd Rieger,
Sjoerd Stallinga,
Christiaan Hulleman
|
17:05 | 17:20 | |
Polygon-based colocalization analysis for multicolor single-molecule localization microscopy data (# 46)
Florian Levet,
Jean-Baptiste Sibarita
|
17:20 | 17:35 | |
Preprocessing structured background signals to improve super-resolution fluorescence images (# 14)
Siewert Hugelier,
Tomas Lukes,
Peter Dedecker,
Paul Eilers,
Cyril Ruckebusch
|
17:35 | 17:50 | |
An automated bayesian pipeline for rapid analysis of single-molecule binding data (# 33)
Carlas Sierd Smith,
Karina Jouravleva,
Maximiliaan Huisman,
Samson M. Jolly,
Phillip D. Zamore,
David Grunwald
|
17:50 | 18:05 | |
Dinner Break |
18:30 | 20:30 | (on own) |
QBI Society Meeting |
20:30 | 22:00 | Small Assembly Room |
Start | End | Location | |
---|---|---|---|
Registration Desk Opens |
08:00 | 18:00 | Foyer (Hall 1): Registration Area |
Lecture (Structured Illumination theme) Session Chair: Raimund Ober |
08:30 | 09:20 | Lecture Room 1 (NEF) |
Structured Illumination, past and present development
Rainer Heintzmann
|
08:30 | 09:20 | |
Lecture (Optics theme) Session Chair: Jörg Enderlein |
09:20 | 09:40 | Lecture Room 1 (NEF) |
Measuring the phase and intensity of the light: from quantitative label-free imaging to fluorescence 3D super-resolution deep in tissues (# 161)
Pierre Bon
|
09:20 | 09:40 | |
Tutorial (Spatial Statistics) Session Chair: Jean-Christophe Olivo-Marin |
09:40 | 10:10 | Lecture Room 1 (NEF) |
A tutorial in spatial statistics for microscopy data analysis. (# 148)
Edward Cohen
|
09:40 | 10:10 | |
Coffee Break |
10:10 | 10:40 | Foyer (Hall 1) |
Minisymposium: Structured illumination: a review of the state of the art Session Chair: Rainer Heintzmann |
10:40 | 12:10 | Lecture Room 1 (NEF) |
A signal processing view of Structured Illumination Microscopy
Jean-Christophe Olivo-Marin
|
10:40 | 11:00 | |
Noise controlled image reconstruction for structured illumination microscopy (# 91)
Sjoerd Stallinga
|
11:00 | 11:15 | |
Robust adaptive optics for structured illumination microscopy fluorescence imaging (# 127)
Mantas Žurauskas,
Martin Booth
|
11:15 | 11:30 | |
High-speed, real-time reconstructed structured illumination microscopy of living cells (# 154)
Thomas Huser
|
11:30 | 11:50 | |
Random Illumination Microscopy: using uncontrolled speckles to improve the resolution of fluorescence microscopy
Anne Sentenac
|
11:50 | 12:10 | |
Session: Applications in Cell Biology and Biophysics II Session Chair: Daniel Wüstner |
10:40 | 12:10 | Lecture Room 2 (Dortoir) |
A detailed analysis of the mobility of synaptic proteins reveals principles of protein segregation in the synapse and in the axon (# 20)
Sofiia Reshetniak,
Sven Truckenbrodt,
Silvio Rizzoli
|
10:40 | 10:55 | |
Investigation of the cross-talk between desmosomes and tetraspanin-enriched microdomains (# 32)
Maryam Arab,
Iqra Arif,
Jeremy Pike,
Natalie Poulter,
Martyn Chidgey,
Elena Odintsova
|
10:55 | 11:10 | |
The TCR is randomly distributed in the plasma membrane of resting T cells (# 88)
Andreas M Arnold,
Benedikt Rossboth,
Gerhard J. Schütz
|
11:10 | 11:25 | |
Multimodal microscopy reveals stiffness-dependent nanoscale remodeling of different actin modules during cell protrusion (# 99)
Alessandra Cambi
|
11:25 | 11:40 | |
Functional insights into the intrinsically disordered protein α-synuclein (# 153)
Amin Fakhree,
Christian Blum,
Mireille Claessens
|
11:40 | 11:55 | |
Three-dimensional single molecule imaging, with cellular context, of an engineered FcRn antagonist using remote focusing multifocal plane microscopy (# 169)
Sreevidhya Ramakrishnan,
Sungyong You,
Jerry Chao,
Anish V Abraham,
E. Sally Ward,
Raimund J Ober
|
11:55 | 12:10 | |
Lunch (provided) |
12:10 | 13:30 | Foyer (Hall 1): Food Area |
Session: Structured Illumination Session Chair: Sjoerd Stallinga |
13:30 | 14:30 | Lecture Room 1 (NEF) |
Structured illumination for single molecule localization microscopy at depth (# 84)
Pierre Jouchet,
Clement Cabriel,
Nicolas Bourg,
Marion Bardou,
Guillaume Dupuis,
Christian Poüs,
Emmanuel Fort,
Sandrine Leveque-Fort
|
13:30 | 13:45 | |
Super-resolved live imaging for a wide range of biological applications using Random Illumination Microscopy (RIM) (# 121)
Simon Labouesse,
Emmanuel Martin,
Renaud Poincloux,
Sylvain Cantaloube,
Tong Li,
Christian Rouvière,
Magali Suzanne,
Nathalie Campo,
Sophie Allard,
Mathieu Pinot,
Marc Allain,
Jérome Idier,
Anne Sentenac,
Thomas Mangeat
|
13:45 | 14:00 | |
Novel method for structured illumination retinal imaging (# 124)
Yann Lai-Tim,
Laurent Mugnier,
Francois Orieux,
Roberto Baena-Galle,
Serge Meimon
|
14:00 | 14:15 | |
Structured illumination - localization microscopy (# 130)
Stefan Wieser
|
14:15 | 14:30 | |
Session: Machine Learning in High Throughput Imaging Session Chair: Patrick Bouthemy |
14:30 | 15:15 | Lecture Room 1 (NEF) |
Use of deep learning in high-throughput flow imaging microscopy applications
Christopher P Calderon
|
14:30 | 14:45 | |
Advanced imaging flow cytometry (# 36)
Andreas Kleiber,
Thomas Henkel
|
14:45 | 15:00 | |
High and deep imaging flow cytometry: a potential diagnostic tool for hematological disorders (# 159)
Anne E Carpenter,
Minh Doan
|
15:00 | 15:15 | |
Session: Spatial Statistics Session Chair: Edward Cohen |
13:30 | 14:15 | Lecture Room 2 (Dortoir) |
Modelling the spatial distribution of the type 6 secretion system in Pseudonomas aeruginosa (# 53)
Scott Ward,
Edward Cohen,
Niall Adams
|
13:30 | 13:45 | |
Mapping and comparing spatial distributions in biological imaging (# 64)
Jasmine Burguet,
Philippe Andrey
|
13:45 | 14:00 | |
Cluster analysis of the cell membrane (# 78)
Jerome Boulanger,
Leila A Muresan
|
14:00 | 14:15 | |
Session: Single Molecule Counting and Cluster Analysis Session Chair: Keith A Lidke |
14:15 | 15:15 | Lecture Room 2 (Dortoir) |
In vitro verification of a molecular counting technique based on fluorophore blinking statistics using DNA Origami (# 17)
Daniel Felipe Nino,
Daniel Djayakarsana,
Nafiseh Rafiei,
Anton Zilman,
Josh Milstein
|
14:15 | 14:30 | |
Measuring ligand surface density on various substrates using fluorescence fluctuation microscopy (# 52)
Dwiria Wahyuni,
Martial Balland,
Olivier Destaing,
Irène Wang,
Antoine Delon
|
14:30 | 14:45 | |
Overcoming blinking artifacts in nanocluster detection with two-color storm (# 71)
Magdalena Schneider,
Andreas Arnold,
Florian Baumgart,
Gerhard J. Schütz
|
14:45 | 15:00 | |
Quantifying protein oligomerization in living cells: a systematic comparison of fluorescent proteins and application to developmental cell-cell fusion (# 129)
Valentin Dunsing,
Madlen Luckner,
Boris Zühlke,
Roberto Petazzi,
Andreas Herrmann,
Salvatore Chiantia
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15:00 | 15:15 | |
Session: Applications in Cell Biology and Biophysics Session Chair: Alessandra Cambi |
13:30 | 14:15 | Lecture Room 3 (Horizons) |
Micro-fluctuations of the length of the mitotic spindle reveal its mechanics and its dynamics during cell division (# 56)
Benjamin Mercat,
Xavier Pinson,
Yann Le Cunff,
Jonathan Fouchard,
Hadrien Mary,
Sylvain Pastezeur,
Yannick Gachet,
Sylvie Tournier,
Hélène Bouvrais,
Jacques Pécréaux
|
13:30 | 13:45 | |
3D-EM-ISH – a novel tool to visualize specific chromatin regions (# 74)
Blazej H Ruszczycki
|
13:45 | 14:00 | |
Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis (# 103)
Julien Moukhtar,
Elise Laruelle,
Alain Trubuil,
Katia Blecram,
David Legland,
Zhor Khadir,
Jean-Christophe Palauqui,
Philippe Andrey
|
14:00 | 14:15 | |
Session: Software Session Chair: Mark Bates |
14:15 | 15:15 | Lecture Room 3 (Horizons) |
Combining annotation of movies and learning for fate prediction from early embryo development observation (# 51)
Alain Trubuil,
Alline Reis,
Véronique Duranthon,
Brigitte Le Guienne,
Nathalie Le Brusq,
Soundouss Messoudi,
Guillaume Brocart
|
14:15 | 14:30 | |
u-track 3D: A tracking framework to quantify, observe and contextualize intracellular dynamics in three dimensions. (# 77)
Philippe Roudot,
Wesley R. Legant,
Kevin Dean,
Ana David,
Daniel Gerlich,
Reto Fiolka,
Eric Betzig,
Gaudenz Danuser
|
14:30 | 14:45 | |
PartSeg - GUI for image processing algorithm in Python (# 89)
Grzegorz Bokota,
Nirmal Das,
Adriana Magalska,
Subhadip Basu,
Jacek Sroka,
Dariusz Plewczynski
|
14:45 | 15:00 | |
A human-in-the-loop approach to image analysis (# 144)
Mohamed El Beheiry,
Sebastien Doutreligne,
Fabien Reyal,
Jean-Baptiste Masson
|
15:00 | 15:15 | |
Coffee Break |
15:15 | 16:45 | Foyer (Hall 1) |
Poster Session: Tracking |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Applications in Cell Biology and Biophysics |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Spatial Statistics |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Single Molecule Counting and Cluster Analysis |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Image Analysis Methods Development |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Digital Pathology |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Software |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Poster Session: Structured Illumination |
15:15 | 16:45 | Foyer (Hall 1): Poster Area |
Sponsor Session: New R&D microscopy advances in France-BioImaging by Jean Salamero |
16:20 | 16:35 | Lecture Room 1 (NEF) |
GdR Imabio - Complex diffusion analysis challenge by Cyril Favard |
16:35 | 16:40 | Lecture Room 1 (NEF) |
Session: Image Analysis Methods Development Session Chair: Keith A Lidke |
16:45 | 18:00 | Lecture Room 1 (NEF) |
How accurately two or more fluorophores can be spectrally resolved in a fluorescence microscope? (# 16)
Sripad Ram
|
16:45 | 17:00 | |
Object detection networks for localization and classification of cells in fluorescence microscopy acquisition and analysis. (# 10)
Dominic Waithe
|
17:00 | 17:15 | |
Automatic registration for multidimensional correlative microscopies with error assessment and detections of deformations (# 101)
Perrine Paul-Gilloteaux
|
17:15 | 17:30 | |
Membrane curvature estimation method for cryo-electron tomography (# 118)
Maria Kalemanov,
Javier F. Collado,
Wolfgang Baumeister,
Rubén Fernández-Busnadiego,
Antonio Martínez-Sánchez
|
17:30 | 17:45 | |
Accordion-like collagen fibrils suggested by P-SHG image modeling : implication in liver fibrosis (# 142)
Denis Rouede,
Emmanuel Schaub,
Jean-Jacques Bellanger,
Frederic Ezan,
François Tiaho
|
17:45 | 18:00 | |
Session: Tracking Session Chair: Patrick Bouthemy |
16:45 | 18:00 | Lecture Room 2 (Dortoir) |
Local Maximum Likelihood estimation for time-varying Single Particle Tracking models (# 58)
Boris I Godoy,
Nicholas Vickers,
Sean Andersson
|
16:45 | 17:00 | |
3D motion estimation in 3D light microscopy image sequences: application to cell migration (# 43)
Sandeep Manandhar,
Patrick Bouthemy,
Philippe Roudot,
Charles Kervrann
|
17:00 | 17:15 | |
Non-equilibrium forces govern anomalous dynamics of subcellular domains in mammalian cells (# 68)
Lorenz Stadler,
Konstantin S.A. Speckner,
Matthias Weiss
|
17:15 | 17:30 | |
The topography of biological membranes artefactually creates the appearance of anomalous diffusion: a remedy (# 79)
Jeremy Adler,
Ingela Parmryd,
Robin Strand,
Ida Sintorn
|
17:30 | 17:45 | |
Fisher information matrix for molecules with stochastic trajectories (# 192)
Milad Rafiee Vahid,
Bernard Hanzon,
Raimund J Ober
|
17:45 | 18:00 | |
Session: Digital Pathology Session Chair: Sripad Ram |
16:45 | 18:00 | Lecture Room 3 (Horizons) |
3D fluorescence whole slide imaging using confocal multi-line scanning (# 93)
Leon van der Graaff,
Sjoerd Stallinga
|
16:45 | 17:00 | |
Medical image analysis: Brain tumor grade classification (# 97)
Kawtar EL Karfi,
Azeddine AIbrahimi
|
17:00 | 17:15 | |
Robust discrimination of antigen stain in histopathology (# 133)
Laura Nicolas-Saenz,
Paula Martin-Gonzalez,
Patricia Garoz,
Felipe Calvo,
Sara Guerrero-Apizua,
Arrate Muñoz-Barrutia
|
17:15 | 17:30 | |
QuPath – a tool for quality assurance, enhanced user training, and improved reproducibility of image analysis in histopathology research (# 137)
Zbigniew Mikulski,
Katarzyna Dobaczewska,
Angela Denn,
Sara A McArdle
|
17:30 | 17:45 | |
Segmenting 3D vascular networks with deep learning (# 176)
Natalie Holroyd,
Claire Walsh,
Monica Sidarous,
Eoin Finnerty,
Rebecca Shipley,
Simon Walker-Samuel
|
17:45 | 18:00 | |
Conference Closing |
18:10 | 18:30 | Lecture Room 1 (NEF) |
Poster Award Announcement - Sponsored by Institut de Recherches Servier |
18:30 | 18:45 | Lecture Room 1 (NEF) |
Closing Gala Dinner Reception |
19:00 | 23:00 | La French Tech - Le Pool (Le Mabilay, 2 rue de la Mabilais, Rennes) |
9 Jan (Wed)
10 Jan (Thu)
11 Jan (Fri)
3D stochastic process simulation for better interpretation of molecular dynamics related to cell wall biogenesis observed with TIRF microscopy ( # 72 , Board: 6 )
Charles Kervrann,
Alain Trubuil,
Cyrille Billaudeau,
Rut Carballido-Lopez,
Yunjiao LU
|
3D tracking of endocytic events using lattice light sheet microscopy ( # 92 , Board: 8 )
Cesar Augusto VALADES CRUZ,
Alison Forrester,
Christian Wunder,
Charles Kervrann,
Jean SALAMERO,
Ludger Johannes
|
A mechano-imaging method to quantify intracellular biophysics ( # 140 , Board: 48 )
Aleix Boquet-Pujadas,
Elisabeth Labruyere,
Jean-Christophe Olivo-Marin
|
A pyramidal PDE-constrained approach to quasi-static optical elastography ( # 141 , Board: 51 )
Aleix Boquet-Pujadas,
Jean-Christophe Olivo-Marin
|
Adaptive optics flood-illumination ophthalmoscope with structured illumination capabilities ( # 123 , Board: 16 )
Yann Lai-Tim,
Laurent Mugnier,
Elena Gofas-Salas,
Pedro Mece,
Cyril Petit,
Francois Orieux,
Michel Paques,
Serge Meimon
|
Analysing and quantifying intracellular particles movements in 3D LLSM data ( # 109 , Board: 44 )
Antoine Salomon,
Vincent Briane,
Myriam Vimond,
Cesar Augusto VALADES CRUZ,
Charles Kervrann
|
Automated inhibitor screening of aurka kinase activity based on a FRET biosensor ( # 13 , Board: 13 )
Florian Sizaire,
Gilles Le Marchand,
Giulia Bertolin,
Sandrine Ruchaud,
Claude Prigent,
Otmane Bouchareb,
Olivier Chanteux,
Marc Tramier
|
Automatic detection of tumoral tissue in hepatocellular carcinoma digital slides using deep convolutional networks ( # 65 , Board: 53 )
Qinghe Zeng,
Nicolas Lomenie,
Julien Calderaro,
Christophe Klein
|
Biophysical characterization of the interactions between Influenza A virus matrix protein M1 and host plasma membrane ( # 112 , Board: 24 )
Salvatore Chiantia
|
Brownian motion using a piezo actuated microscope stage ( # 26 , Board: 4 )
Nicholas Vickers,
Sean Andersson
|
Challenges in structured illumination microscopy ( # 30 , Board: 69 )
Verena Richter,
Mathis Piper,
Michael Wagner,
Herbert Schneckenburger
|
Complex diffusion analysis challenge ( # 208 , Board: 11 )
Maxime Woringer,
Hugues Berry,
Dominique Bourgeois,
Cyril Favard,
Ignacio Izeddin
|
Computational pipeline for registration of 3D images of fixed specimens to 4D time-lapse recordings of developing biological systems ( # 138 , Board: 61 )
Manan Lalit,
Mette Handberg-Thorsager,
Florian Jug,
Pavel Tomancak
|
Determining biophysical parameters in living cells with Icy ( # 198 , Board: 10 )
Maria Manich,
Aleix Boquet-Pujadas,
Nancy Guillén,
Jean-Christophe Olivo-Marin
|
High-resolution 2d+t imaging of calcium signaling microdomains in cardiac myocytes ( # 132 , Board: 27 )
Mouna Abdesselem
|
Icy: A powerful and user friendly platform for Bio image analysis. ( # 211 , Board: 63 )
Fabrice de Chaumont,
Stephane Dallongeville,
Jean-Christophe Olivo-Marin
|
Imaging release of siRNAs from vesicles damaged by membrane-disrupting drugs ( # 239 , Board: 33 )
Hampus Du Rietz,
Hampus Hedlund,
Anders Wittrup
|
Large scale feature extraction and image classification for high content screening microscopy ( # 113 , Board: 57 )
Laurent Thomas,
Gunjan Pandey,
Jens H.Westhoff,
Franz Schaefer,
Jochen Gehrig
|
Measuring ligand 2D/surface density on various substrates using fluorescence fluctuation microscopy ( # 49 , Board: 35 )
Dwiria Wahyuni,
Irène Wang,
Antoine Delon
|
Mechanistic investigation of mEos4b blinking suggests a strategy to reduce track interruptions in sptPALM ( # 25 , Board: 2 )
Daniel Thédié,
Dominique Bourgeois,
Elke De Zitter,
Peter Dedecker,
Virgile Adam
|
Mesoscopic organisation of polarity proteins in epithelial cells ( # 210 , Board: 29 )
Edo Dzafic,
Leila A Muresan
|
Near real time analysis of stress fiber formation in stem cells ( # 31 , Board: 55 )
Lara Hauke,
Benjamin Eltzner,
Carina Wollnik,
Stephan Huckemann,
Florian Rehfeldt
|
Protein copy number estimation in biological samples with high fluorescent background ( # 75 , Board: 40 )
Johan Hummert,
Klaus Yserentant,
Wioleta Chmielewicz,
Dirk-Peter Herten
|
Protein counting in T-cell receptor microclusters ( # 139 , Board: 42 )
Wioleta Chmielewicz,
Dirk-Peter Herten,
Oliver T. Fackler
|
Protein counting in localisation microscopy ( # 62 , Board: 37 )
Daniel Varga,
Miklós Erdélyi
|
Quantitative 3D geometry for large scale connectomics data ( # 126 , Board: 46 )
Minh-Son Phan,
Katherine Matho,
Lamiae Abdeladim,
Jean Livet,
Emmanuel Beaurepaire,
Anatole Chessel
|
SIMTOOLBOX 2.0: AN OPEN-SOURCE TOOLBOX FOR STRUCTURED ILLUMINATION MICROSCOPY ( # 220 , Board: 67 )
Jakub Pospíšil,
Tomáš Lukeš,
Pavel Křížek,
Martin Ovesný,
Vojtěch Terš,
Karel Fliegel,
Miloš Klíma,
Guy M. Hagen
|
Simulator of benchmarking image datasets for time-lapse lightsheet microscopy ( # 134 , Board: 59 )
Vladimír Ulman
|
Software framework for Advanced Single Molecule Data Analysis ( # 218 , Board: 65 )
Anish V Abraham,
Dukwhan David Kim,
Jerry Chao,
E. Sally Ward,
Raimund J Ober
|
Spatial analysis of protein or lipid distributions on the surface of spherical beads ( # 135 , Board: 50 )
Anastasia Solomatina,
Alice Cezanne,
Marino Zerial,
Ivo F. Sbalzarini
|
Studying oscillatory behavior in asymmetric division of Caenorhabditis elegans embryo with fluorescence miscroscopy ( # 24 , Board: 15 )
Anca Caranfil,
Charles Kervrann,
Yann Le Cunff,
Jacques Pécréaux
|
Time resolve intensity photo bleaching (TRIP) as a tool for quantify bound /unbound fraction of lamin A protein in vivo. ( # 229 , Board: 31 )
Eugene Brozgol,
Irena Bronshtein,
Iatamar Kantor,
Yuval Garini
|
Ultrastructure of endo-lysosomes during cholesterol efflux studied by combined fluorescence and cryo-soft X-ray tomography ( # 35 , Board: 18 )
Alice Dupont Juhl,
Frederik W. Lund,
Maria Louise Vestbjerg Jensen,
Maria Szomek,
Gitte Krogh Nielsen,
Christian W. Heegaard,
Peter Guttmann,
Stephan Werner,
James McNally,
Gerd Schneider,
Sergey Kapishnikov,
Daniel Wüstner
|
Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development ( # 60 , Board: 22 )
Thang Duong Quoc Le,
Christine Girousse,
David Legland,
Anne-Laure Chateigner Boutin
|
Using time-lapse microscopy to unravel the stochastic nature of Listeria monocytogenes infection ( # 44 , Board: 20 )
Josephine C Moran,
Andrew Berry,
James Bagnall,
Pawel Paszek,
Ian Roberts
|