QBI 2019 Conference

Accepted Abstracts

ID Abstract Title
10
Object detection networks for localization and classification of cells in fluorescence microscopy acquisition and analysis.

Dominic Waithe (University of Oxford)

12
Deep learning for quantitative bi-exponential fluorescence lifetime imaging

Jason T. Smith (Rensselaer Polytechnic Institute)

Ruoyang Yao (Rensselaer Polytechnic Institute)

Sez-Jade Chen (Rensselaer Polytechnic Institute)

Nattawut Sinsuebphon (Rensselaer Polytechnic Institute)

Alena Rudkouskaya (Albany Medical College)

Margarida Barroso (Albany Medical College)

Pingkun Yan (Rensselaer Polytechnic Institute)

Xavier Intes (Rensselaer Polytechnic Institute)

13
Automated inhibitor screening of aurka kinase activity based on a FRET biosensor

Florian Sizaire (Institut de Génétique et de Développement de Rennes)

Gilles Le Marchand (Institut de Génétique et de Développement de Rennes)

Giulia Bertolin (Institut de Génétique et de Développement de Rennes)

Sandrine Ruchaud (Station Roscoff)

Claude Prigent (Institut de Génétique et de Développement de Rennes)

Otmane Bouchareb (Inscoper)

Olivier Chanteux (Inscoper)

Marc Tramier (Institut de Génétique et de Développement de Rennes)

14
Preprocessing structured background signals to improve super-resolution fluorescence images

Siewert Hugelier (KU Leuven)

Tomas Lukes (EPFL)

Peter Dedecker (KU Leuven)

Paul Eilers (Erasmus MC)

Cyril Ruckebusch (U Lille)

15
Deep learning for dense and multicolor localization microscopy

Elias Nehme (Technion, Israel Institute of Technology)

Eran Hershko (Technion, Israel Institute of Technology)

Lucien Weiss (Technion, Israel Institute of Technology)

Tomer Michaeli (Technion, Israel Institute of Technology)

Yoav Shechtman (Technion, Israel Institute of Technology)

16
How accurately two or more fluorophores can be spectrally resolved in a fluorescence microscope?

Sripad Ram (Pfizer, Inc.)

17
In vitro verification of a molecular counting technique based on fluorophore blinking statistics using DNA Origami

Daniel Felipe Nino (University of Toronto)

Daniel Djayakarsana (University of Toronto Mississauga)

Nafiseh Rafiei (University of Toronto)

Anton Zilman (University of Toronto)

Josh Milstein (University of Toronto)

19
Probing cells dynamics with quantitative Dynamic Full-Field OCT

Kassandra Groux (ESPCI)

Jules Scholler (ESPCI)

Kate Grieve (UPMC)

Claude Boccara (ESPCI)

20
A detailed analysis of the mobility of synaptic proteins reveals principles of protein segregation in the synapse and in the axon

Sofiia Reshetniak (University Medical Center Goettingen)

Sven Truckenbrodt (IST Austria)

Silvio Rizzoli (University Medical Centre Goettingen)

21
Calibrating a microscope by learning its diversity

Valentin Debarnot (ITAV, CNRS)

Pierre Weiss (ITAV, CNRS)

Thomas Mangeat (CBI, CNRS)

Paul Escande (CNRS)

22
Semi-quantitative analysis of the trace metallic elements with synchrotron radiation X-ray fluorescence analysis and the experimental concentration standard specimens

Motohiro Uo (The University of Tokyo)

Takahiro Wada (Tokyo Medical and Dental University)

23
Quantitative analysis of collagen microstructure in vitro and in vivo by means of multi-phasor analysis of second harmonic generation microscopy.

Giuseppe Chirico (Universita' di Milano-Bicocca)

laura D'Alfonso (Universita' di Milano-Bicocca)

MAddalena Collini (Universita' di Milano-Bicocca)

Margaux Bouzin (Universita' di Milano-Bicocca)

Riccardo Scodellaro (Università degli Studi di Milano-Bicocca)

laura Sironi (Universita' di Milano-Bicocca)

24
Studying oscillatory behavior in asymmetric division of Caenorhabditis elegans embryo with fluorescence miscroscopy

Anca Caranfil (INRIA Rennes - Bretagne Atlantique, France)

Charles Kervrann (Inria)

Yann Le Cunff (IGDR)

Jacques Pécréaux (IGDR)

25
Mechanistic investigation of mEos4b blinking suggests a strategy to reduce track interruptions in sptPALM

Daniel Thédié (IBS (Institut de Biologie Structurale))

Dominique Bourgeois (IBS (Institut de Biologie Structurale))

Elke De Zitter (KU Leuven)

Peter Dedecker (KU Leuven)

Virgile Adam (IBS (Institut de Biologie Structurale))

26
Brownian motion using a piezo actuated microscope stage

Nicholas Vickers (Boston University)

Sean Andersson (Boston University)

27
About the optimal optical transfer function of a microscope

Jörg Enderlein (Georg August University)

28
DNA origami as a nanoscale platform for T-cell activation

Joschka Peter Hellmeier (TU Vienna)

Eva Sevcsik (TU Vienna)

30
Challenges in structured illumination microscopy

Verena Richter (Aalen University)

Mathis Piper (Aalen University)

Michael Wagner (Aalen University)

Herbert Schneckenburger (Aalen University)

31
Near real time analysis of stress fiber formation in stem cells

Lara Hauke (Georg August Universität Göttingen)

Benjamin Eltzner (Georg August Universität Göttingen)

Carina Wollnik (Georg August Universität Göttingen)

Stephan Huckemann (Georg August Universität Göttingen)

Florian Rehfeldt (Georg August Universität Göttingen)

32
Investigation of the cross-talk between desmosomes and tetraspanin-enriched microdomains

Maryam Arab (University of Birmingham)

Iqra Arif (University of Birmingham)

Jeremy Pike (University of Birmingham)

Natalie Poulter (University of Birmingham)

Martyn Chidgey (University of Birmingham)

Elena Odintsova (University of Birmingham)

33
An automated bayesian pipeline for rapid analysis of single-molecule binding data

Carlas Sierd Smith (Delft University of Technology)

Karina Jouravleva (University of Massachusetts Medical School)

Maximiliaan Huisman (University of Massachusetts Medical School)

Samson M. Jolly (University of Massachusetts Medical School)

Phillip D. Zamore (University of Massachusetts Medical School)

David Grunwald (University of Massachusetts Medical School)

34
Imaging complex protein machines by high-throughput localization microscopy

Joran Deschamps (EMBL)

Markus Mund (University of Geneva)

Jonas Ries (EMBL)

35
Ultrastructure of endo-lysosomes during cholesterol efflux studied by combined fluorescence and cryo-soft X-ray tomography

Alice Dupont Juhl (The University of Southern Denmark)

Frederik W. Lund (The University of Southern Denmark)

Maria Louise Vestbjerg Jensen (The University of Southern Denmark)

Maria Szomek (The University of Southern Denmark)

Gitte Krogh Nielsen (University of Aarhus)

Christian W. Heegaard (University of Aarhus)

Peter Guttmann (Helmholtz-Zentrum Berlin)

Stephan Werner (Helmholtz-Zentrum Berlin)

James McNally (Helmholtz-Zentrum Berlin)

Gerd Schneider (Helmholtz-Zentrum Berlin)

Sergey Kapishnikov (University of Copenhagen)

Daniel Wüstner (The University of Southern Denmark)

36
Advanced imaging flow cytometry

Andreas Kleiber (Leibniz Institute of Photonic Technology)

Thomas Henkel (Leibniz Institute of Photonic Technology)

37
Image based modeling of leaf development

Mohamed Oughou (INRA)

Patrick Laufs (INRA)

Eric Cunha (INRA)

Eric Biot (INRA)

Nicolas Arnaud (INRA)

Philippe Andrey (INRA)

Jasmine Burguet (INRA)

38
LIESS-FCS: spatially resolved diffusion modes measured by STED nanoscopy

Falk Schneider (University of Oxford)

Dominic Waithe (University of Oxford)

Erdinc Sezgin (University of Oxford)

Christian Eggeling (Friedrich-Schiller-University and Leibniz Institute of Photonic Technology)

39
High content cell classification and tracking improvement by morphology and quantitative phase feature combination

Benoit Wattellier (PHASICS)

Sherazade Aknoun (PHASICS)

Manuel Yonnet (PHASICS)

Fabrice Valentino (PHASICS)

Djamel Brahmi (Phasics)

Michel Barlaud (Université de Nice)

Philippe Pognonec (Université de Nice)

Thierry Pourcher (Université de Nice)

40
Segmentation of adjacent cells in a C. elegans embryo using a multi-compartment active contour

Anaïs Badoual (Ecole Polytechnique Fédérale de Lausanne)

42
Unraveling molecular arrangement of synaptic proteins with multiple color super resolution microscopy ans statistical object distance analyse with icy soda

Thibault Lagache (Institut Pasteur)

Philippe Bun (Institute of Psychiatry & Neurosciences of Paris)

Stephane Dallongeville (Institut Pasteur)

Alexandre Dufour (Institut Pasteur)

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

Thierry Galli (Institute of Psychiatry & Neurosciences of Paris)

Lydia A Danglot (Institute of Psychiatry & Neurosciences of Paris)

43
3D motion estimation in 3D light microscopy image sequences: application to cell migration

Sandeep Manandhar (Inria)

Patrick Bouthemy (Inria)

Philippe Roudot (UT Southwestern Medical Center)

Charles Kervrann (Inria)

44
Using time-lapse microscopy to unravel the stochastic nature of Listeria monocytogenes infection

Josephine C Moran (University of Manchester)

Andrew Berry (University of Manchester)

James Bagnall (University of Manchester)

Pawel Paszek (University of Manchester)

Ian Roberts (University of Manchester)

45
Improving spatiotemporal resolution of 3D localization microscopy - withdrawn

Jelmer Cnossen (TU Delft)

Carlas Sierd Smith (Delft University of Technology)

46
Polygon-based colocalization analysis for multicolor single-molecule localization microscopy data

Florian Levet (Interdisciplinary Institute for NeuroScience)

Jean-Baptiste Sibarita (Interdisciplinary Institute for NeuroScience)

47
Two dynamic behaviors of the microtubules at the cell cortex reveal the pulling and pushing forces that position the mitotic spindle in C. elegans embryos

Hélène Bouvrais (Institut de Génétique et Développement de Rennes (IGDR) - UMR 6290)

Danielle Fairbrass (IGDR)

Laurent Chesneau (Institut de Génétique et Développement de Rennes (IGDR) - UMR 6290)

Nina Soler (Institut de Génétique et Développement de Rennes (IGDR) - UMR 6290)

Yann Le Cunff (IGDR)

Thierry Pécot (Inria)

Charles Kervrann (Inria)

Jacques Pécréaux (IGDR)

49
Measuring ligand 2D/surface density on various substrates using fluorescence fluctuation microscopy

Dwiria Wahyuni (Université Grenoble Alpes)

Irène Wang (Université Grenoble Alpes)

Antoine Delon (Université Grenoble Alpes)

50
Semi-blind spatially-variant deconvolution and focus estimation in optical microscopy by use of convolutional neural networks

Adrian Shajkofci (Idiap Research Institute)

Michael Liebling (Idiap Research Institute)

51
Combining annotation of movies and learning for fate prediction from early embryo development observation

Alain Trubuil (INRA)

Alline Reis (INRA)

Véronique Duranthon (INRA)

Brigitte Le Guienne (Allice)

Nathalie Le Brusq (INRA)

Soundouss Messoudi (INRA)

Guillaume Brocart (INRA)

52
Measuring ligand surface density on various substrates using fluorescence fluctuation microscopy

Dwiria Wahyuni (Université Grenoble Alpes)

Martial Balland (Université Grenoble Alpes)

Olivier Destaing (Université Grenoble Alpes)

Irène Wang (Université Grenoble Alpes)

Antoine Delon (Université Grenoble Alpes)

53
Modelling the spatial distribution of the type 6 secretion system in Pseudonomas aeruginosa

Scott Ward (Imperial College)

Edward Cohen (Imperial College London)

Niall Adams (Imperial College London)

54
Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis

Faïçal Selka (INRA)

Thomas Blein (IPS2)

Jasmine Burguet (INRA)

Eric Biot (INRA)

Patrick Laufs (INRA)

Philippe Andrey (INRA)

55
4Pi single molecule localization with an experimental PSF model that achieves theoretical minimal uncertainty

Yiming Li (European Molecular Biology Laboratory)

Jonas Ries (EMBL)

56
Micro-fluctuations of the length of the mitotic spindle reveal its mechanics and its dynamics during cell division

Benjamin Mercat (IGDR CNRS / Univ. Rennes)

Xavier Pinson (Université de Rennes 1)

Yann Le Cunff (IGDR)

Jonathan Fouchard (LBCMCP, CBI CNRS / Univ. Toulouse)

Hadrien Mary (LBCMCP, CBI CNRS / Univ. Toulouse)

Sylvain Pastezeur (IGDR CNRS / Univ. Rennes)

Yannick Gachet (LBCMCP, CBI CNRS / Univ. Toulouse)

Sylvie Tournier (LBCMCP, CBI CNRS / Univ. Toulouse)

Hélène Bouvrais (Institut de Génétique et Développement de Rennes (IGDR) - UMR 6290)

Jacques Pécréaux (IGDR)

58
Local Maximum Likelihood estimation for time-varying Single Particle Tracking models

Boris I Godoy (Boston University)

Nicholas Vickers (Boston University)

Sean Andersson (Boston University)

60
Use of X-ray micro computed tomography imaging to analyze the morphology of wheat grain through its development

Thang Duong Quoc Le (INRA Angers-Nantes)

Christine Girousse (INRA Site De Crouel)

David Legland (INRA)

Anne-Laure Chateigner Boutin (INRA Angers-Nantes)

61
3D ConvNets improve macromolecule localization in 3D cellular cryo-electron tomograms

Emmanuel Moebel (Inria)

Charles Kervrann (Inria)

62
Protein counting in localisation microscopy

Daniel Varga (University of Szeged)

Miklós Erdélyi (University of Szeged)

63
Quantitative phase imaging of adherent mammalian cells: a comparison of three different techniques

Cédric Allier (CEA-LETI)

Julien Savatier (Institut Fresnel)

Serge Monneret (Institut Fresnel / Institut Carnot STAR)

Yves Usson (University Joseph Fourier - Grenoble 1)

Ondrej Mandula (CEA-Leti)

Lionel Hervé (CEA-Leti)

Pierre Blandin (CEA-Leti)

Sophie Morales (CEA-Leti)

64
Mapping and comparing spatial distributions in biological imaging

Jasmine Burguet (INRA)

Philippe Andrey (INRA)

65
Automatic detection of tumoral tissue in hepatocellular carcinoma digital slides using deep convolutional networks

Qinghe Zeng (INSERM U1138 - Centre de Recherche des Cordeliers)

Nicolas Lomenie (Université Paris Descartes)

Julien Calderaro (Hôpital Henri Mondor)

Christophe Klein (INSERM U1138 - Centre de Recherche des Cordeliers)

66
Artefact free high density localisation microscopy analysis

Richard John Marsh (King's College London)

67
Multi-color cryo-fluorescence microscopy

Maximiliaan Huisman (UMass Medical School)

Farzin Farzam (UMass Medical School)

David Grunwald (Umass Medical School)

68
Non-equilibrium forces govern anomalous dynamics of subcellular domains in mammalian cells

Lorenz Stadler (University of Bayreuth)

Konstantin Speckner (University of Bayreuth)

Matthias Weiss (University of Bayreuth)

71
Overcoming blinking artifacts in nanocluster detection with two-color storm

Magdalena Schneider (Vienna University of Technology)

Andreas Arnold (Vienna University of Technology)

Florian Baumgart (Vienna University of Technology)

Gerhard J Schütz (Vienna University of Technology)

72
3D stochastic process simulation for better interpretation of molecular dynamics related to cell wall biogenesis observed with TIRF microscopy

Charles Kervrann (Inria)

Alain Trubuil (INRA)

Cyrille Billaudeau (INRA)

Rut Carballido-Lopez (INRA)

Yunjiao LU (INRA)

73
Scalable analysis of ultra-terabyte brain images with deep learning

Giacomo Mazzamuto (European Laboratory for Non-linear Spectroscopy)

Francesco Orsini (University of Florence)

Matteo Roffilli (Bioretics)

Paolo Frasconi (University of Florence)

Francesco Pavone (European Laboratory for Non-linear Spectroscopy)

Ludovico Silvestri (European Laboratory for Non-linear Spectroscopy)

74
3D-EM-ISH – a novel tool to visualize specific chromatin regions

Blazej H Ruszczycki (Polish Academy of Sciences)

75
Protein copy number estimation in biological samples with high fluorescent background

Johan Hummert (Heidelberg University)

Klaus Yserentant (Heidelberg University)

Wioleta Chmielewicz (Heidelberg University)

Dirk-Peter Herten (Heidelberg University)

76
Intracellular dry-mass density measurements of bacteria using quantitative phase microscopy

Enno Oldewurtel (Institut Pasteur)

Sven van Teeffelen (Institut Pasteur)

77
u-track 3D: A tracking framework to quantify, observe and contextualize intracellular dynamics in three dimensions.

Philippe Roudot (UT Southwestern Medical Center)

Wesley R. Legant (Janelia Farm Research Campus)

Kevin Dean (UT Southwestern Medical Center)

Ana David (Institute of Molecular Biotechnology of the Austrian Academy of Sciences)

Daniel Gerlich (Institute of Molecular Biotechnology of the Austrian Academy of Sciences)

Reto Fiolka (UT Southwestern Medical Center)

Eric Betzig (betzige@janelia.hhmi.org)

Gaudenz Danuser (UT Southwestern Medical Center)

78
Cluster analysis of the cell membrane

Jerome Boulanger (MRC-LMB)

Leila A Muresan (University of Cambridge)

79
The topography of biological membranes artefactually creates the appearance of anomalous diffusion: a remedy

Jeremy Adler (Uppsala University)

Ingela Parmryd (Gothenburg University)

Robin Strand (Uppsala University)

Ida Sintorn (Uppsala University)

80
Multiscale computational modelling of chromatin three-dimensional structure using iPALM microscopic high-resolution images

Zofia Anna Parteka (Centre of New Technologies, University of Warsaw)

Dariusz Plewczyński (Centre of New Technologies, University of Warsaw)

81
A quantitative look at cellular oligonucleotide delivery

Leontien van der Bent (Radboud University Medical Center)

Natalia Feiner (Institute for Bioengineering of Catalonia (IBEC))

R. Alis Olea (Institute for Bioengineering of Catalonia (IBEC))

Johanna Berndt (Leica Microsystems CMS)

Derick Wansink (Radboud University Medical Center)

Lorenzo Albertazzi (Eindhoven University of Technology)

Roland Brock (Radboud University Medical Center)

82
Wide depth reproducible multicolor bioimaging through a combination of 3D single molecule localization strategies

Clement Cabriel (ISMO-CNRS)

Nicolas Bourg (ISMO-CNRS)

Pierre Jouchet (CNRS)

Guillaume Dupuis (université paris sud)

Christophe Leterrier (université marseille)

Aurélie Baron (cnrs)

Boris Vauzeilles (cnrs)

Emmanuel Fort (ESPCI)

Sandrine Leveque-Fort (ISMO-CNRS)

84
Structured illumination for single molecule localization microscopy at depth

Pierre Jouchet (CNRS)

Clement Cabriel (ISMO-CNRS)

Nicolas Bourg (ISMO-CNRS)

Marion Bardou (ISMO-CNRS)

Guillaume Dupuis (université paris sud)

Christian Poüs (université paris sud)

Emmanuel Fort (ESPCI)

Sandrine Leveque-Fort (ISMO-CNRS)

85
Single-shot fluorescence holography for 3D tracking in live cells

Matz Liebel (ICFO -The Institute of Photonic Sciences)

Jaime Ortega Arroyo (ICFO - The Institute of Photonic Sciences)

Vanesa Sanz (ICFO - The Institute of Photonic Sciences)

Johann Osmond (ICFO - The Institute of Photonic Sciences)

Romain Quidant (ICFO - The Institute of Photonic Sciences)

Niek van Hulst (ICFO - The Institute of Photonic Sciences)

86
CNN based semi-supervised FIB-SEM image segmentation via propagation of learned information from a small subset of a single image stack

Kevin G Loftis (Oregon Health & Science University)

Kevin Stoltz (Oregon Health and Science University)

Guillaume Thibault (Oregon Health & Science University)

Jessica L Riesterer (Oregon Health & Sciences University)

Young Hwan Chang (Oregon Health & Science University)

Joe Gray (Oregon Health & Science University)

87
Mapping fluid and single-cell dynamics in a controlled thermal landscape

Jaime Ortega Arroyo (ICFO - The Institute of Photonic Sciences)

Matz Liebel (ICFO -The Institute of Photonic Sciences)

Bernard Ciraulo (ICFO - The Institute of Photonic Sciences)

Stefan Wieser (ICFO - The Institute of Photonic Sciences)

Niek van Hulst (ICFO - The Institute of Photonic Sciences)

Romain Quidant (ICFO - The Institute of Photonic Sciences)

88
The TCR is randomly distributed in the plasma membrane of resting T cells

Andreas M Arnold (TU Wien)

Benedikt Rossboth (TU Wien)

Gerhard J Schütz (Vienna University of Technology)

89
PartSeg - GUI for image processing algorithm in Python

Grzegorz Bokota (University of Warsaw)

Nirmal Das (Jadavapur University)

Adriana Magalska (Nencki Institute of Experimental Biology)

Subhadip Basu (Jadavapur University)

Jacek Sroka (University of Warsaw)

Dariusz Plewczynski (University of Warsaw)

91
Noise controlled image reconstruction for structured illumination microscopy

Sjoerd Stallinga (Delft University of Technology)

92
3D tracking of endocytic events using lattice light sheet microscopy

Cesar Augusto VALADES CRUZ (Institut Curie)

Alison Forrester (Institut Curie)

Christian Wunder (Institut Curie)

Charles Kervrann (Inria)

Jean SALAMERO (Institut Curie)

Ludger Johannes (Institut Curie)

93
3D fluorescence whole slide imaging using confocal multi-line scanning

Leon van der Graaff (Delft University of Technology)

Sjoerd Stallinga (Delft University of Technology)

94
Membrane rolling by annexins inferred from combined fluorescence and AFM imaging - withdrawn

Adam Cohen Simonsen (University of Southern Denmark)

Theresa Louise Boye (Danish Cancer Society Research Center)

Jesper Nylandsted (Danish Cancer Society Research Center)

97
Medical image analysis: Brain tumor grade classification

Kawtar EL Karfi (Medical and Pharmacy School, Mohammed V University, Rabat, Morocco)

Azeddine AIbrahimi (Medical and Pharmacy School, Mohammed V University, Rabat, Morocco)

98
Combining deep learning and active contours opens the way to robust, automated analysis of brain cytoarchitectonics

Nico Scherf (Max Planck Institute for Human Cognitive and Brain Sciences)

Konstantin Thierbach (Max Planck Institute for Human Cognitive and Brain Sciences)

Pierre-Louis Bazin (University of Amsterdam)

Walter de Back (TU Dresden)

Filippos Gavriilidis (Max Planck Institute for Human Cognitive and Brain Sciences)

Evgeniya Kirilina (Max Planck Institute for Human Cognitive and Brain Sciences)

Carsten Jaeger (Max Planck Institute for Human Cognitive and Brain Sciences)

Markus Morawski (University of Leipzig)

Stefan Geyer (Max Planck Institute for Human Cognitive and Brain Sciences)

Nikolaus Weiskopf (Max Planck Institute for Human Cognitive and Brain Sciences)

99
Multimodal microscopy reveals stiffness-dependent nanoscale remodeling of different actin modules during cell protrusion

Alessandra Cambi (Radboud UMC, RIMLS)

100
Characterisation of GFP and derivatives for super-resolution cryogenic single molecule localisation microscopy

Amy N Moores (STFC)

Lin Wang (STFC)

Laura Zanetti-Domingues (STFC)

Benji Bateman (STFC)

Marisa Martin-Fernandez (STFC)

101
Automatic registration for multidimensional correlative microscopies with error assessment and detections of deformations

Perrine Paul-Gilloteaux (CNRS)

102
Experimentally-generated ground truth for tracking lymphocyte populations in image-based immunotherapy screens

Joseph Boyd (MINES Paristech)

Zelia Gouveia (Institut Curie)

Franck Perez (Institut Curie)

Thomas Edgar Walter (Mines ParisTech)

103
Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesis

Julien Moukhtar (INRA)

Elise Laruelle (INRA)

Alain Trubuil (INRA)

Katia Blecram (INRA)

David Legland (INRA)

Zhor Khadir (INRA)

Jean-Christophe Palauqui (INRA)

Philippe Andrey (INRA)

104
Deep learning based detection of cells in 3D Light sheet fluorescence microscopy

Ali Ahmad (Laboratoire LARIS, Université d'Angers)

Pejman Rasti (Laboratoire LARIS, Université d'Angers)

Carole Frindel (INSA Lyon)

David Sarrut (INSA Lyon)

David Rousseau (Université d'Angers)

105
Investigating the spatio-temporal patterning of neural stem cell activation events

Sebastien Herbert (Institut Pasteur Paris)

Nicolas Dray (Institut Pasteur Paris)

Laure Mancini (Institut Pasteur Paris)

Willy Supatto (Ecole Polytechnique)

Jean-Yves Tinevez (Institut Pasteur Paris)

Jean-Baptiste Masson (Institut Pasteur)

Laure Bally-Cuif (Institut Pasteur Paris)

106
Simple and compact microscope for time-lapse phase and fluorescence imaging based on chromatic aberration

Ondrej Mandula (CEA-Leti)

Cédric Allier (CEA-LETI)

Sophie Morales (CEA-Leti)

Jean-Philippe Kleman (Univ. Grenoble Alpes, CEA, CNRS, IBS)

Francoise Lacroix (Univ. Grenoble Alpes, CEA, CNRS, IBS, F-38000 Grenoble)

Lionel Hervé (CEA-Leti)

107
Establishing the theoretical density/SNR limits for SMLM analysis leads to the design of UNLOC a parameter-free and fast computing ImageJ plugin

Sébastien Mailfert (Centre d'Immunologie de Marseille Luminy)

Nicolas Bertaux (Institut Fresnel)

Didier Marguet (Centre d'Immunologie de Marseille Luminy)

108
Adaptive optics allows 3D STED-FCS measurements in the cytoplasm of living cells

Aurélien Barbotin (University of Oxford)

Silvia Galiani (University of Oxford)

Iztok Urbančič (University of Oxford)

Christian Eggeling (Friedrich-Schiller-University and Leibniz Institute of Photonic Technology)

Martin Booth (University of Oxford)

109
Analysing and quantifying intracellular particles movements in 3D LLSM data

Antoine Salomon (Inria Rennes)

Vincent Briane (Inria Rennes)

Myriam Vimond (ENSAI)

Cesar Augusto VALADES CRUZ (Institut Curie)

Charles Kervrann (Inria)

110
A tilted light sheet for single-molecule super-resolution imaging in thick cells

Petar N Petrov (Stanford University)

Anna-Karin Gustavsson (Stanford University)

Yoav Shechtman (Technion, Israel Institute of Technology)

Maurice Lee (Stanford University)

W. E. Moerner (Stanford University)

111
Speed OPIOM (Out-of-Phase Imaging after Optical Modulation) for quantitative multiplexed fluorescence imaging against autofluorescence under ambient light

Ruikang Zhang (Ecole Normale Superieure)

Raja Chouket (Ecole Normale Superieure)

Marie Aude Plamont (Ecole Normale Superieure)

Zsolt Kelemen (INRA)

Agathe Espagne (Ecole Normale Superieure)

Alison Tebo (Ecole Normale Superieure)

Arnaud Gautier (Ecole Normale Superieure)

Lionel Gissot (INRA)

Jean-Denis Faure (INRA)

Ludovic Jullien (Ecole Normale Superieure)

Vincent Croquette (Ecole Normale Superieure)

Thomas le Saux (Ecole Normale Superieure)

112
Biophysical characterization of the interactions between Influenza A virus matrix protein M1 and host plasma membrane

Salvatore Chiantia (University of Potsdam)

113
Large scale feature extraction and image classification for high content screening microscopy

Laurent Thomas (Uniklinikum Heidelberg and Acquifer)

Gunjan Pandey (ACQUIFER is a division of DITABIS Digital Biomedical Imaging Systems AG)

Jens H.Westhoff (Uniklinikum Heidelberg)

Franz Schaefer (Uniklinikum Heidelberg)

Jochen Gehrig (ACQUIFER is a division of DITABIS Digital Biomedical Imaging Systems AG)

114
Quantitative evaluation of a next generation scientific CMOS (sCMOS) camera for high fidelity imaging

Shigeo Watanabe (Hamamatsu Photonics K.K.)

Takafumi Higuchi (Hamamatsu Photonics K.K.)

Teruo Takahashi (Hamamatsu Photonics K.K.)

Katsuhide Ito (Hamamatsu Photonics K.K.)

115
Segmentation of 3D images of plant tissues at multiple scales using the level set method

Annamaria Kiss (ENS de Lyon)

Typhaine Moreau (ENS de Lyon)

Vincent Mirabet (ENS de Lyon)

Cerasela Iliana Calugaru (ENS de Lyon)

Arezki Boudaoud (ENS de Lyon)

Pradeep Das (ENS de Lyon)

116
Measuring the absolute degree of labeling for self-labeling protein tags

Klaus Yserentant (Heidelberg University)

Felix Braun (Heidelberg University)

Siegfried Hänselmann (Heidelberg University)

Wioleta Chmielewicz (Heidelberg University)

Johan Hummert (Heidelberg University)

Florian Salopiata (German Cancer Research Center)

Dirk-Peter Herten (Heidelberg University)

117
Single molecule nucleocytoplasmic transport dynamics in live cells

Seoungjun Lee (King’s College London)

118
Membrane curvature estimation method for cryo-electron tomography

Maria Kalemanov (Max Planck Institute of Biochemistry)

Javier F. Collado (Max Planck Institute of Biochemistry)

Wolfgang Baumeister (Max Planck Institute of Biochemistry)

Rubén Fernández-Busnadiego (Max Planck Institute of Biochemistry)

Antonio Martínez-Sánchez (Max Planck Institute of Biochemistry)

120
Super-resolution imaging of unlabeled living cells using superoscillatory polarization contrast

Edward T F Rogers (University Of Southampton)

Shmma Quraishe (University of Southampton)

Katrine Rogers (The Open University)

Tracey Newman (University of Southampton)

Peter Smith (University of Southampton)

Nikolay Zheludev (University of Southampton)

121
Super-resolved live imaging for a wide range of biological applications using Random Illumination Microscopy (RIM)

Simon Labouesse (1 CNRS, Centrale Marseille, Institut Fresnel, Aix Marseille Univ)

Emmanuel Martin (CNRS CBI)

Renaud Poincloux (CNRS IPBS)

Sylvain Cantaloube (CNRS CBI)

Tong Li (CNRS CBI)

Christian Rouvière (CNRS CBI)

Magali Suzanne (CNRS CBI)

Nathalie Campo (CNRS CBI)

Sophie Allard (INSERM)

Mathieu Pinot (CNRS IGDR)

Marc Allain (CNRS Institut Fresnel)

Jérome Idier (CNRS LS2N)

Anne Sentenac (CNRS Institut Fresnel)

Thomas Mangeat (CBI)

122
Photon count estimation in single-molecule imaging

Rasmus Østergaard Thorsen (TUDelft)

Bernd Rieger (TU Delft)

Sjoerd Stallinga (Delft University of Technology)

Christiaan Hulleman (TUDelft)

123
Adaptive optics flood-illumination ophthalmoscope with structured illumination capabilities

Yann Lai-Tim (ONERA)

124
Novel method for structured illumination retinal imaging

Yann Lai-Tim (ONERA)

Laurent Mugnier (ONERA)

125
Novel tetrazine probes for fluorogenic protein labeling

Felix Braun (Heidelberg University)

Philipp Werther (Heidelberg University)

Klaus Yserentant (Heidelberg University)

Achim Wieczorek (Heidelberg University)

Richard Wombacher (Heidelberg University)

Dirk-Peter Herten (Heidelberg University)

126
Quantitative 3D geometry for large scale connectomics data

Minh-Son Phan (Ecole Polytechnique Paris-Saclay)

Katherine Matho (Cold Spring Harbor)

Lamiae Abdeladim (Ecole Polytechnique Paris-Saclay)

Jean Livet (Sorbonne Universités)

Emmanuel Beaurepaire (Ecole Polytechnique Paris-Saclay)

Anatole Chessel (Ecole Polytechnique Paris-Saclay)

127
Robust adaptive optics for structured illumination microscopy fluorescence imaging

Mantas Žurauskas (University of Oxford)

Martin Booth (University of Oxford)

128
Design of an "orthogonality-breaking" polarimetric confocal microscope to study intracellular architecture dynamics

Stephanie Dutertre (University of Rennes 1)

Mehdi Alouini (University of Rennes 1)

Julien Fade (Univ Rennes)

Emilie Gillier (Univ Rennes)

Cyril Hamel (Univ Rennes)

Sébastien Huet (Univ Rennes)

Gilles Le Marchand (Univ Rennes)

Rebecca Smith (Univ Rennes)

Paulami Ray (Univ Rennes)

Marc Tramier (Institut de Génétique et de Développement de Rennes)

129
Quantifying protein oligomerization in living cells: a systematic comparison of fluorescent proteins and application to developmental cell-cell fusion

Valentin Dunsing (University of Potsdam)

Madlen Luckner (Humboldt-Universität zu Berlin)

Boris Zühlke (University of Potsdam)

Roberto Petazzi (University of Potsdam)

Andreas Herrmann (Humboldt University of Berlin)

Salvatore Chiantia (University of Potsdam)

130
Structured illumination - localization microscopy

Stefan Wieser (ICFO - The Institute of Photonic Sciences)

131
A dynamic reconstruction of the endocytic machinery in yeast from static superresolution images

Yu-Le Wu (European Molecular Biology Laboratory)

Philipp Hoess (European Molecular Biology Laboratory)

Markus Mund (European Molecular Biology Laboratory)

Joran Deschamps (EMBL)

Jonas Ries (EMBL)

132
High-resolution 2d+t imaging of calcium signaling microdomains in cardiac myocytes

Mouna Abdesselem (KU Leuven)

133
Robust discrimination of antigen stain in histopathology

Laura Nicolas-Saenz (universidad carlos iii)

Paula Martin-Gonzalez (Universidad Carlos III de Madrid)

Patricia Garoz (Universidad Carlos III de Madrid)

Felipe Calvo (Clinica Universidad de Navarra)

Sara Guerrero-Apizua (Universidad Carlos III de Madrid)

Arrate Muñoz-Barrutia (Universidad Carlos III de Madrid)

134
Simulator of benchmarking image datasets for time-lapse lightsheet microscopy

Vladimír Ulman (Max Planck Institute of Molecular Cell Biology and Genetics)

135
Spatial analysis of protein or lipid distributions on the surface of spherical beads

Anastasia Solomatina (MPI-CBG, Dresden, Germany)

Alice Cezanne (MPI-CBG)

Marino Zerial (MPI-CBG)

Ivo F. Sbalzarini (MPI-CBG)

136
1 nanometer precision by bayesian grouping of localizations

Mohamadreza Fazel (University of New Mexico)

Bernd Rieger (TU Delft)

Ralf Jungmann (Max-Planck-Institute of Biochemistry)

Keith A Lidke (University of New Mexico)

137
QuPath – a tool for quality assurance, enhanced user training, and improved reproducibility of image analysis in histopathology research

Zbigniew Mikulski (La Jolla Institute for Immunology)

Katarzyna Dobaczewska (La Jolla Institute for Allergy and Immunology)

Angela Denn (La Jolla Institute for Allergy and Immunology)

Sara A McArdle (La Jolla Institute)

138
Computational pipeline for registration of 3D images of fixed specimens to 4D time-lapse recordings of developing biological systems

Manan Lalit (Max Planck Institute of Molecular Cell Biology and Genetics)

Mette Handberg-Thorsager (MPI-CBG)

Florian Jug (Max Planck Institute of Molecular Cell Biology and Genetics)

Pavel Tomancak (Max Planck Institute of Molecular Cell Biology and Genetics)

139
Protein counting in T-cell receptor microclusters

Wioleta Chmielewicz (Heidelberg University)

Dirk-Peter Herten (Heidelberg University)

Oliver T. Fackler (University Hospital)

140
A mechano-imaging method to quantify intracellular biophysics

Aleix Boquet-Pujadas (Institut Pasteur)

Elisabeth Labruyere (Institut Pasteur)

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

141
A pyramidal PDE-constrained approach to quasi-static optical elastography

Aleix Boquet-Pujadas (Institut Pasteur)

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

142
Accordion-like collagen fibrils suggested by P-SHG image modeling : implication in liver fibrosis

Denis Rouede (University of Rennes 1)

Emmanuel Schaub (CNRS)

Jean-Jacques Bellanger (University of Rennes 1)

Frederic Ezan (University of Rennes 1)

François Tiaho (University of Rennes 1)

143
Single molecule at the age of big data: probabilistic pipeline and unsupervised learning

Francois Laurent (institut pasteur)

Alexander Serov (institut pasteur)

Christian Vestergaard (Institut Pasteur)

Jean-Baptiste Masson (Institut Pasteur)

144
A human-in-the-loop approach to image analysis

Mohamed El Beheiry (Institut Curie)

Sebastien Doutreligne (Institut Pasteur)

Fabien Reyal (Institut Curie Hospital)

Jean-Baptiste Masson (Institut Pasteur)

145
Nuclear pores as universal reference standards for quantitative microscopy

Jonas Ries (EMBL)

146
Data fusion for localization microscopy

Bernd Rieger (TU Delft)

147
From image to information: using advanced gene editing, microscopy, and modeling to advance cell biology

Mary (Molly) M Maleckar (Allen Institute for Cell Science)

148
A tutorial in spatial statistics for microscopy data analysis.

Edward Cohen (Imperial College London)

153
Functional insights into the intrinsically disordered protein α-synuclein

Amin Fakhree (University of Twente)

Christian Blum (University of Twente)

Mireille Claessens (University of Twente)

154
High-speed, real-time reconstructed structured illumination microscopy of living cells

Thomas Huser (University of Bielefeld)

155
Simultaneous detection of 3D orientation and 3D spatial localization of single emitters for super resolution structural imaging

Miguel A Alonso (Institut Fresnel)

157
An analysis of protein movement in the synapse

Silvio Rizzoli (University Medical Centre Goettingen)

158
Why to automate your microscope and how to control it

Winfried Wiegraebe (Allen Institute for Cell Science)

Mark Bates (Max Planck Institute for Biophysical Chemistry)

159
High and deep imaging flow cytometry: a potential diagnostic tool for hematological disorders

Anne E Carpenter (Broad Institute of Harvard and MIT)

Minh Doan (Broad Institute of MIT and Harvard)

160
The problem of orientation-induced mislocalizations of single emitters in cryo‐fluorescence microscopy

Oleksii Nevskyi (Georg August University Goettingen)

Jörg Enderlein (Georg August University)

Ingo Gregor (Georg August University Goettingen)

161
Measuring the phase and intensity of the light: from quantitative label-free imaging to fluorescence 3D super-resolution deep in tissues

Pierre Bon (CNRS - Univ. Bordeaux - IOGS)

162
Lectin-driven and glycosphingolipid-dependent construction of endocytic pits

Ludger Johannes (Institut Curie)

163
Uncovering transients in single molecule motion: Application to cell surface proteins

Anthony Vega (UT Southwestern Medical Center)

Spencer Freeman (Hospital for Sick Children)

Sergio Grinstein (Hospital for Sick Children)

Khuloud Jaqaman (UT Southwestern Medical Center)

164
Volumetric imaging of whole-tumors reveal cancer malignancy

Per Uhlen (Karolinska Institutet)

165
Use of deep learning in high-throughput flow imaging microscopy applications

Christopher P Calderon (University of Colorado)

166
Unraveling the Rules of Life a few photons at a time

Steve Pressé (Arizona State University)

167
Analyzing three-dimensional biological specimens observed with light sheet microscopy under near-natural conditions

Ernst HK Stelzer (Goethe-Universität Frankfurt am Main)

168
Content-aware image restoration for light and electron microscopy

Florian Jug (Max Planck Institute of Molecular Cell Biology and Genetics)

169
Three-dimensional single molecule imaging, with cellular context, of an engineered FcRn antagonist using remote focusing multifocal plane microscopy

Sreevidhya Ramakrishnan (Texas A&M University)

Sungyong You (Texas A&M University)

Jerry Chao (Texas A&M University)

Anish V Abraham (Texas A&M University)

E. Sally Ward (University of Southampton / Texas A&M Health Science Center)

Raimund J Ober (Texas A&M University)

170
Combining optical imaging of cleared tissue with mathematical modelling and in vivo imaging to predict drug delivery and therapeutic response

Simon Walker-Samuel (University College London)

Paul Sweeney (University College London)

Angela d'Esposito (University College London)

Rebecca Shipley (University College London)

171
A signal processing view of Structured Illumination Microscopy

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

172
Analyzing development, function and pathofunction of the vascular systems using light sheet microscopy

Friedemann Kiefer (European Institute for Mol. Imaging (EIMI))

174
Fast nearly isotropic imaging of large samples like human tumors with ultramicroscopy

Hans-Ulrich Dodt (TU Vienna)

Saiedeh Saghafi (TU Vienna)

Klaus Becker (TU Vienna)

Christian Hahn (TU Vienna)

Marko Pende (TU Vienna)

Inna Sabdyusheva (TU Vienna)

Massih Foroughpour (TU Vienna)

176
Segmenting 3D vascular networks with deep learning

Natalie Holroyd (University College London)

Claire Walsh (University College London)

Monica Sidarous (University College London)

Eoin Finnerty (University College London)

Rebecca Shipley (University College London)

Simon Walker-Samuel (University College London)

177
Sparse modeling of data and deep learning

Michael Elad (Technion - Israel Institute of Technology)

181
Structure and dynamics of endosomes analyzed by imaging-based methods

Marino Zerial (MPI-CBG)

183
Correlative light - electron microscopy: approaches, applications and outlook

Judith Klumperman (University Medical Center Utrecht)

184
Structured Illumination, past and present development

Rainer Heintzmann (Institute of Physical Chemistry)

185
Quantitative visualization of SNARE complex formation in living cells

Geert van den Bogaart (University of Groningen)

186
Random Illumination Microscopy: using uncontrolled speckles to improve the resolution of fluorescence microscopy

Anne Sentenac (CNRS Institut Fresnel)

187
The ImageJ ecosystem: An open platform for biomedical image analysis.

Kevin W Eliceiri (University of Wisconsin at Madison)

188
Structure and dynamics of endosomes analyzed by imaging-based methods

Yannis Kalaidzidis (Max Planck Institute of Molecular Cell Biology and Genetics)

190
Microscopy as a tool in the development of antibody-based therapeutics

E. Sally Ward (University of Southampton / Texas A&M Health Science Center)

191
Methods and applications of quantitative dynamic full-field coherence tomography

Jules Scholler (ESPCI)

Kassandra Groux (ESPCI)

Claude Boccara (ESPCI)

Kate Grieve (UPMC)

192
Fisher information matrix for molecules with stochastic trajectories

Milad Rafiee Vahid (Texas A&M University)

Bernard Hanzon (University College Cork)

Raimund J Ober (Texas A&M University)

193
Practical Aspects of Adaptive Optics for Microscopes

Martin Booth (University of Oxford)

Aurélien Barbotin (University of Oxford)

Mantas Žurauskas (University of Oxford)

194
Transmembrane pickets corral bystanders in the plasma membrane by tethering to the submembrane cytoskeleton

Khuloud Jaqaman (UT Southwestern Medical Center)

Sivakami Mylvaganam (University of Toronto)

Anthony Vega (UT Southwestern Medical Center)

Sergio Grinstein (Hospital for Sick Children)

Spencer Freeman (Hospital for Sick Children)

196
Label-free refractometry and pathogen detection by super-critical angle fluorescence

Boris Ferdman (Technion – Israel Institute of Technology)

Lucien Weiss (Technion, Israel Institute of Technology)

Onit Alalouf (Technion – Israel Institute of Technology)

Yonathan Haimovich (Technion – Israel Institute of Technology)

Yoav Shechtman (Technion, Israel Institute of Technology)

198
Determining biophysical parameters in living cells with Icy

Maria Manich (Institut Pasteur)

Aleix Boquet-Pujadas (Institut Pasteur)

Nancy Guillén (Institut Pasteur)

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

203
Deep learning for dense 3D single molecule localization microscopy

Elias E Nehme (Technion - Israel Institute of Technology)

Daniel Freedman (Google)

Tomer Michaeli (Technion, Israel Institute of Technology)

Yoav Shechtman (Technion, Israel Institute of Technology)

206
Improved single molecule localization from dual-objective microscopes with ZOLA-3D

benoit lelandais (institut pasteur)

MICKAEL LELEK (institut Pasteur)

christophe Zimmer (Institut Pasteur)

207
Computational boosts to single molecule localization microscopy

Christophe Zimmer (Institut Pasteur)

208
Complex diffusion analysis challenge

Maxime Woringer (Institut Pasteur)

Hugues Berry (Université de Lyon, INRIA)

Dominique Bourgeois (IBS (Institut de Biologie Structurale))

Cyril Favard (CNRS)

Ignacio Izeddin (ESPCI, PSL University, CNRS)

209
RSMLM: An R-package for pointillist based analysis of single molecule localization microscopy data

Jeremy Pike (University of Birmingham)

Iain B Styles (Univerisity of Birmingham)

210
Mesoscopic organisation of polarity proteins in epithelial cells

Edo Dzafic (Cambridge University)

Leila A Muresan (University of Cambridge)

211
Icy: A powerful and user friendly platform for Bio image analysis.

Fabrice de Chaumont (Institut Pasteur)

Stephane Dallongeville (Institut Pasteur)

Jean-Christophe Olivo-Marin (Institut Pasteur - CNRS 3691)

212
Nanostructured substrates for super-resolution imaging

Maia Brunstein (Université Paris Descartes)

Anne Talneau (CNRS)

Minh-Chau Nguyen (Vision institute)

Pacal Berto (Vision institute)

Anne-Laure Fehrembach (CNRS Institut Fresnel)

Anne Sentenac (CNRS Institut Fresnel)

Martin Oheim (Université Paris Descartes)

213
Quantifying molecular confinement using sSTED-FCS: The case of lipid trapping during HIV-1 assembly in living T cells

Cyril Favard (CNRS)

Jakub Chojnacki (Irsi CAIXA)

Christian Eggeling (Friedrich-Schiller-University and Leibniz Institute of Photonic Technology)

Delphine Muriaux (CNRS)

214
Using microscopy to dissect endolysosomal trafficking and function

Frederick Maxfield (Weill Cornell Medical College)

215
Structured illumination in laser scanning microscopy for super-resolved multiphoton imaging: theory and simulations of scanning SIM

Eli Slenders (Hasselt University)

Marcel Ameloot (Hasselt University)

M vandeVen (Biomedical Research Institute, Hasselt University)

216
Adaptive Holographic Region of Interest Illumination with Oblique Angles for use in Single Molecule Localization Microscopy

Alexander Jügler (Leibniz-Institute of Photonic Technology)

Jan Becker (Leibniz-Institute of Photonic Technology)

Patrick Then (Leibniz-Institute of Photonic Technology)

Ronny Förster (Leibniz-Institute of Photonic Technology)

Rainer Heintzmann (Institute of Physical Chemistry)

217
Workshop - Single-molecule localization microscopy: performing 3D super-resolution reconstruction using open-source software

Daniel Sage (EPFL)

218
Software framework for Advanced Single Molecule Data Analysis

Anish V Abraham (Texas A&M University)

Dukwhan David Kim (Texas A&M University)

Jerry Chao (Texas A&M University)

E. Sally Ward (University of Southampton / Texas A&M Health Science Center)

Raimund J Ober (Texas A&M University)

220
SIMTOOLBOX 2.0: AN OPEN-SOURCE TOOLBOX FOR STRUCTURED ILLUMINATION MICROSCOPY

Jakub Pospíšil (UNI-Bielefeld)

Tomáš Lukeš (FEE, Czech Technical University in Prague)

Pavel Křížek (Charles University in Prague)

Martin Ovesný (Charles University in Prague)

Vojtěch Terš (FEE, Czech Technical University in Prague)

Karel Fliegel (FEE, Czech Technical University in Prague)

Miloš Klíma (FEE, Czech Technical University in Prague)

Guy M. Hagen (University of Colorado at Colorado Springs)

221
Fluorescence studies of sterol transport between cellular membranes

Daniel Wüstner (The University of Southern Denmark)

222
Machine Learning Workshop

Edward Cohen (Imperial College London)

223
Biological Deep Thermal Imaging with Fluorescence Lifetime of Rare-Earth-Based Ceramics Particles that Emit Near-Infrared Light in the Second Biological Window

Takumi Chihara (Tokyo University of Science)

Masakazu Umezawa (Tokyo University of Science)

Keiji Miyata (Tokyo University of Science)

Shota Sekiyama (Tokyo University of Science)

Naoki Hosokawa (Tokyo University of Science)

Kyohei Okubo (Tokyo University of Science)

Masao Kamimura (Tokyo University of Science)

Kohei Soga (Tokyo University of Science)

224
Temperature Sensing of Deep Abdominal Region in Mice by Using Over-1000 nm Near-Infrared Luminescence of Rare-Earth-Doped NaYF4 Nanothermometer

Shota Sekiyama (Tokyo University of Science)

Masakazu Umezawa (Tokyo University of Science)

Shuhei Kuraoka (Tokyo University of Science)

Takuji Ube (Tokyo University of Science)

Masao Kamimura (Tokyo University of Science)

Kohei Soga (Tokyo University of Science)

226
Machine learning workshop: an introduction to machine learning and a taste of advanced methods

Seth Flaxman (Imperial College London)

227
Large-Scale Optimization for Machine Learning

Julien Mairal (Inria)

228
Introduction to deep learning

Christophe Zimmer (Institut Pasteur)

229
Time resolve intensity photo bleaching (TRIP) as a tool for quantify bound /unbound fraction of lamin A protein in vivo.

‪Eugene Brozgol‬‏ (Bar Ilan University)

Irena Bronshtein (Bar Ilan University)

Iatamar Kantor (Bar Ilan University)

Yuval Garini (Bar Ilan University)

230
Image profiling exposes a pharmacological window for modifiers of neuronal network connectivity

Marlies Verschuuren (University of Antwerp)

Winnok De Vos (University of Antwerp)

231
FluoSim: simulator of single molecule dynamics for fluorescence live-cell and super-resolution imaging

Olivier Thoumine (Interdisciplinary Institute for Neuroscience)

Matthieu Lagardère (Interdisciplinary Institute for Neuroscience)

232
Correlative STED and SMLM, without demons

Kirti Prakash (University of Cambridge)

233
PyMOL Molecular Graphics System for Immunoglobulin Cross-Reactivity Analysis

Nasreddine SAIDI (Institut Pasteur Tunis)

235
PRACTICAL IMPLEMENTATION OF THE OFF-AXIS HOLOGRAPHIC MICROSCOPE

Radim Kolar (Brno university of technology)

Vratislav Cmiel (Brno university of technology)

Larisa Baiazitova (Brno university of technology)

Ivo Provaznik (Brno university of technology)

236
Label-free Prediction of Subcellular Organization: Capturing Variation and Integrating Observations

Chawin Ounkomol (Allen Institute)

Sharmishtaa Seshamani (Allen Institute)

Forrest Collman (Allen Institute)

Mary (Molly) M Maleckar (Allen Institute for Cell Science)

Gregory R Johnson (Allen Institute for Cell Science)